RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PLSCR4Q9NRQ2 329 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZNF346Q9UL40 294 aaKnown RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 HKR1P10072 659 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZP1P60852 638 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZNF117Q03924 483 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 DUSP5Q16690 384 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 SMRP1Q8NCR6 262 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZNF740Q8NDX6 193 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 MRPL24Q96A35 216 aaKnown RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 PLPP1O14494 284 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 SRSF10O75494 262 aaKnown RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 LINC00869P0C866 280 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 ANKRD55Q3KP44 614 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 PSMG4Q5JS54 123 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 TRAT1Q6PIZ9 186 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 Q8WTZ3 238 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 RTL8AQ9BWD3 113 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 CHODLQ9H9P2 273 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 ANKRD10Q9NXR5 420 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 RGPD4Q7Z3J3 1758 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 FAM221AA4D161 298 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 PRSS47A8MTI9 375 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 K7ESM1 405 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 KLK10O43240 276 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 AMY1AP04745 511 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 NPPBP16860 134 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 CFAP161Q6P656 301 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 ADAD2Q8NCV1 583 aaKnown RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 ZNF707Q96C28 371 aaPredicted RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 SMIM8Q96KF7 97 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 TMEM106BQ9NUM4 274 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 COLQQ9Y215 455 aaPredicted RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 OR2T8A6NH00 312 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 KLF7O75840 302 aaPredicted RBP11.71□□□□□ -0.53
USP40-208ENST00000450966 DEFA4P12838 97 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 IL9P15248 144 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 ZBTB25P24278 435 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 PPP2CBP62714 309 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 PPP2CAP67775 309 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 GVQW1Q8N7I0 195 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 STXBP6Q8NFX7 210 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 SPACA5Q96QH8 159 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 TMEM38BQ9NVV0 291 aa11.71□□□□□ -0.53
USP40-208ENST00000450966 RBM11P57052 281 aaKnown RBP11.71□□□□□ -0.54
USP40-208ENST00000450966 WDR38Q5JTN6 314 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 CD200R1LQ6Q8B3 271 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 PRDM13Q9H4Q3 707 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 ZNF257Q9Y2Q1 563 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 LAMA4Q16363 1823 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 PRSS37A4D1T9 235 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 C1QAP02745 245 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 CD1AP06126 327 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 HEPN1Q6WQI6 88 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 TMEM170AQ8WVE7 144 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 ST8SIA1Q92185 356 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 SLC25A33Q9BSK2 321 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 SH2D2AQ9NP31 389 aa11.71□□□□□ -0.54
USP40-208ENST00000450966 GDF9O60383 454 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 NXPH1P58417 271 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 ZNF718Q3SXZ3 478 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 OR2M3Q8NG83 312 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 SYNGR2O43760 224 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 VDAC1P21796 283 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 CCL7P80098 99 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 ACSM6Q6P461 480 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 OSR2Q8N2R0 312 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 DEFB124Q8NES8 71 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 REG4Q9BYZ8 158 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 DAPP1Q9UN19 280 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 A0A1B0GTL3 188 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 ERGP11308 486 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 ATOH7Q8N100 152 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 WDYHV1Q96HA8 205 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 DMRTA2Q96SC8 542 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 HIST1H4GQ99525 98 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 NRSN2Q9GZP1 204 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 SIGLEC7Q9Y286 467 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 IGHV1OR15-9A0A0B4J2B8 117 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 IGSF23A1L1A6 192 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 OOEPA6NGQ2 149 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 H0Y8X5 98 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 CHST1O43916 411 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 CXorf1O96002 111 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 GRPP07492 148 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 CD22P20273 847 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 PAX2Q02962 417 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 MYBPHQ13203 477 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 CALHM1Q8IU99 346 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 UBALD1Q8TB05 177 aa11.7□□□□□ -0.54
USP40-208ENST00000450966 H3BUT2 72 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 VENTXO95231 258 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 OCIAD2Q56VL3 154 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 OR2K2Q8NGT1 345 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 NT5CQ8TCD5 201 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 PP6455Q8WZ26 134 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 BARX1Q9HBU1 254 aaPredicted RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 SLC25A5P05141 298 aaKnown RBP11.69□□□□□ -0.54
USP40-208ENST00000450966 CEACAM5P06731 702 aa11.69□□□□□ -0.54
USP40-208ENST00000450966 SLC35E4Q6ICL7 350 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms