RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 ABHD3Q8WU67 409 aa16.33■□□□□ 0.2
SDCBP-204ENST00000447182 FSCN3Q9NQT6 498 aa16.33■□□□□ 0.2
SDCBP-204ENST00000447182 MTCH1Q9NZJ7 389 aa16.33■□□□□ 0.2
SDCBP-204ENST00000447182 TRBV6-6A0A0A6YYG2 114 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 A0A1B0GU03 582 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 LOC102723971A0A1B0GUV8 181 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 WNT2P09544 360 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 GPM6AP51674 278 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 CEBPGP53567 150 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 WIPI1Q5MNZ9 446 aaPredicted RBP16.32■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF343Q6P1L6 599 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 PCSK4Q6UW60 755 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 MKXQ8IYA7 352 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 ZDHHC23Q8IYP9 409 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 OR13D1Q8NGV5 346 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 CALHM2Q9HA72 323 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 WDFY3Q8IZQ1 3526 aa16.32■□□□□ 0.2
SDCBP-204ENST00000447182 S100GP29377 79 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF674Q2M3X9 581 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 H1FOOQ8IZA3 346 aaPredicted RBP16.31■□□□□ 0.2
SDCBP-204ENST00000447182 RAB40CQ96S21 281 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 KIAA1324LA8MWY0 1029 aaPredicted RBP16.31■□□□□ 0.2
SDCBP-204ENST00000447182 TRAPPC2LH3BP13 241 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 NTN3O00634 580 aaPredicted RBP16.31■□□□□ 0.2
SDCBP-204ENST00000447182 RPS18P62269 152 aaKnown RBP16.31■□□□□ 0.2
SDCBP-204ENST00000447182 HLA-DRB3P79483 266 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 ZFP36L1Q07352 338 aaKnown RBP16.31■□□□□ 0.2
SDCBP-204ENST00000447182 LINC00596Q86U02 117 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 TDHQ8IZJ6 230 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF295-AS1Q8N0V1 137 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 LINC00470Q9BZP3 86 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 IL36RNQ9UBH0 155 aa16.31■□□□□ 0.2
SDCBP-204ENST00000447182 IGKV3D-15A0A087WSY6 115 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 TRAPPC6AO75865 159 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 IFNA5P01569 189 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 IGHEP01854 428 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 GFRA1P56159 465 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 NDUFA6P56556 154 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 LINC00469Q8N7U9 141 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 MRPL30Q8TCC3 161 aaKnown RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF845Q96IR2 970 aaPredicted RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 PLK3Q9H4B4 646 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 GAR1Q9NY12 217 aaKnown RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 CRIM1Q9NZV1 1036 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 OR2W1Q9Y3N9 320 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 CCDC163A0A0D9SF12 145 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 A0A0G2JRQ6 117 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BKO60814 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 SS18L1O75177 396 aaPredicted RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BJP06899 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 COX5BP10606 129 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BOP23527 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BBP33778 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BDP58876 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BCP62807 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST2H2BEQ16778 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 PYY3Q5JQD4 70 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF324BQ6AW86 544 aaPredicted RBP16.3■□□□□ 0.2
SDCBP-204ENST00000447182 NEK7Q8TDX7 302 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BHQ93079 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 GPR146Q96CH1 333 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BNQ99877 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 HIST1H2BMQ99879 126 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 TMEM242Q9NWH2 141 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 PILRBQ9UKJ0 227 aa16.3■□□□□ 0.2
SDCBP-204ENST00000447182 GATCO43716 136 aaKnown RBP16.29■□□□□ 0.2
SDCBP-204ENST00000447182 NXPH3O95157 252 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 S100A2P29034 98 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 PNRC1Q12796 327 aaPredicted RBP16.29■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF880Q6PDB4 577 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 SLC23A3Q6PIS1 610 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 MRPL21Q7Z2W9 205 aaKnown RBP16.29■□□□□ 0.2
SDCBP-204ENST00000447182 THNSL2Q86YJ6 484 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 OR5A2Q8NGI9 324 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 BCL2L14Q9BZR8 327 aa16.29■□□□□ 0.2
SDCBP-204ENST00000447182 CISD1Q9NZ45 108 aaKnown RBP16.29■□□□□ 0.2
SDCBP-204ENST00000447182 NOSIPQ9Y314 301 aaKnown RBP16.29■□□□□ 0.2
SDCBP-204ENST00000447182 TGIF2-C20orf24A0A0A6YYL0 155 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 SEC14L6B5MCN3 397 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 YKT6O15498 198 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 TNFSF12O43508 249 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 MRPL33O75394 65 aaKnown RBP16.28■□□□□ 0.2
SDCBP-204ENST00000447182 ARF1P84077 181 aaKnown RBP16.28■□□□□ 0.2
SDCBP-204ENST00000447182 Q0VFX4 171 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 ACSF3Q4G176 576 aaPredicted RBP16.28■□□□□ 0.2
SDCBP-204ENST00000447182 FAM90A2PQ658T7 463 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 APOBEC3DQ96AK3 386 aaPredicted RBP16.28■□□□□ 0.2
SDCBP-204ENST00000447182 DEPPQ9NTK1 212 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 TREM2Q9NZC2 230 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 URGCP-MRPS24S4R325 110 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 ZNF729A6NN14 1252 aaPredicted RBP16.28■□□□□ 0.2
SDCBP-204ENST00000447182 HSPB6O14558 160 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 F10P00742 488 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 IGHV3-9P01782 118 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 CD200P41217 278 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 C20orf204Q6ZNR8 217 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 MBD3L1Q8WWY6 194 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 CABLES2Q9BTV7 478 aa16.28■□□□□ 0.2
SDCBP-204ENST00000447182 PRDM6Q9NQX0 595 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms