RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ATAD3CQ5T2N8 411 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 SLC16A12Q6ZSM3 486 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 OR4F17Q8NGA8 305 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 UBALD1Q8TB05 177 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 CCDC107Q8WV48 283 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 TOMM40LQ969M1 308 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 MUL1Q969V5 352 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 CYYR1Q96J86 154 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 OR4F4Q96R69 305 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 S100A13Q99584 98 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 PLCXD1Q9NUJ7 323 aa16.5■□□□□ 0.23
SDC1-205ENST00000447124 PAK1IP1Q9NWT1 392 aaPredicted RBP16.5■□□□□ 0.23
SDC1-205ENST00000447124 CNOT2Q9NZN8 540 aaKnown RBP16.5■□□□□ 0.23
SDC1-205ENST00000447124 A0A1W2PRX2 142 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 TMEM30CPA0ZSE6 113 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 CASQ2O14958 399 aaPredicted RBP16.49■□□□□ 0.23
SDC1-205ENST00000447124 ZNF780AO75290 641 aaPredicted RBP16.49■□□□□ 0.23
SDC1-205ENST00000447124 FAM106CPP0CH98 169 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 GTF2F2P13984 249 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 FSTP19883 344 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 MPV17LQ2QL34 196 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 GLIPR1L1Q6UWM5 242 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 LINC00596Q86U02 117 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 C8orf59Q8N0T1 100 aaPredicted RBP16.49■□□□□ 0.23
SDC1-205ENST00000447124 OR56B4Q8NH76 319 aa16.49■□□□□ 0.23
SDC1-205ENST00000447124 AMMECR1Q9Y4X0 333 aaPredicted RBP16.49■□□□□ 0.23
SDC1-205ENST00000447124 ANKRD65E5RJM6 399 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 MADCAM1Q13477 382 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 C9orf152Q5JTZ5 239 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 AHSA2Q719I0 299 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 NANOGP1Q8N7R0 232 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 BPIFB6Q8NFQ5 453 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 ARL11Q969Q4 196 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 DERL3Q96Q80 235 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 FKBP14Q9NWM8 211 aa16.48■□□□□ 0.23
SDC1-205ENST00000447124 MRPS28Q9Y2Q9 187 aaKnown RBP16.48■□□□□ 0.23
SDC1-205ENST00000447124 TCRBV4S1A1TA0A5B7 111 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 MAS1P04201 325 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 CD1AP06126 327 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 CELP19835 753 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 LOXL3P58215 753 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 HNF4GQ14541 408 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 ZNF497Q6ZNH5 498 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 JAGN1Q8N5M9 183 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 WFDC9Q8NEX5 89 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 MYDGFQ969H8 173 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 PCDHB16Q9NRJ7 776 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 RCC2Q9P258 522 aaKnown RBP16.47■□□□□ 0.23
SDC1-205ENST00000447124 CKLFQ9UBR5 152 aa16.47■□□□□ 0.23
SDC1-205ENST00000447124 M0QZK8 103 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 ORC5O43913 435 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 VHLP40337 213 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 RAB7AP51149 207 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 GP2P55259 537 aaKnown RBP16.46■□□□□ 0.23
SDC1-205ENST00000447124 TAS2R43P59537 309 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 GPR176Q14439 515 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 OR8H3Q8N146 312 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 STX19Q8N4C7 294 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 TMEM104Q8NE00 496 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 OR52M1Q8NGK5 317 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 TFAP2CQ92754 450 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 BANF2Q9H503 90 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 GFOD1Q9NXC2 390 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 MOB4Q9Y3A3 225 aa16.46■□□□□ 0.23
SDC1-205ENST00000447124 IGHV3-43A0A0B4J1X8 118 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 IGHV3-43DP0DP04 118 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 WNT4P56705 351 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 INSL4Q14641 139 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 CDH26Q8IXH8 852 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 LINC00311Q8N616 119 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 C5orf56Q8N8D9 126 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 OR10X1Q8NGY0 326 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 NEK7Q8TDX7 302 aa16.45■□□□□ 0.22
SDC1-205ENST00000447124 IGKV1D-33P01593 117 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 IGKV1-33P01594 117 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 TMEM11P17152 192 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 REG1BP48304 166 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 ZNF816Q0VGE8 651 aaPredicted RBP16.44■□□□□ 0.22
SDC1-205ENST00000447124 EBI3Q14213 229 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 HES1Q14469 280 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 SIGIRRQ6IA17 410 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 UNQ9370/PRO34162Q6UXP9 181 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 C5orf24Q7Z6I8 188 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 OR4K15Q8NH41 348 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 ST6GALNAC6Q969X2 333 aa16.44■□□□□ 0.22
SDC1-205ENST00000447124 MRPS24Q96EL2 167 aaKnown RBP16.44■□□□□ 0.22
SDC1-205ENST00000447124 NKX1-2Q9UD57 310 aaPredicted RBP16.44■□□□□ 0.22
SDC1-205ENST00000447124 TSSC4Q9Y5U2 329 aaPredicted RBP16.44■□□□□ 0.22
SDC1-205ENST00000447124 IGHV3-72A0A0B4J1Y9 119 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 IGHV1-3A0A0C4DH29 117 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 LINC01548A6NM66 108 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 C12orf77C9JDV5 145 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 MCRIP1C9JLW8 97 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 AIPO00170 330 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 SDCBPO00560 298 aaPredicted RBP16.43■□□□□ 0.22
SDC1-205ENST00000447124 HSD17B6O14756 317 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 MYL12BO14950 172 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 SLC31A2O15432 143 aa16.43■□□□□ 0.22
SDC1-205ENST00000447124 GAPDHP04406 335 aaKnown RBP16.43■□□□□ 0.22
SDC1-205ENST00000447124 ZNF134P52741 427 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms