RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CEACAM16Q2WEN9 425 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 FAM90A2PQ658T7 463 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 OR2T2Q6IF00 324 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 GUSBP11Q6P575 273 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF383Q8NA42 475 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 OR5A2Q8NGI9 324 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 HIST1H2AAQ96QV6 131 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 BCL2L14Q9BZR8 327 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 STRADBQ9C0K7 418 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 MAGT1Q9H0U3 335 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 CALHM2Q9HA72 323 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 LIN7CQ9NUP9 197 aaKnown RBP9.45□□□□□ -0.9
LIMS1-207ENST00000422797 OR2W1Q9Y3N9 320 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 UNC80Q8N2C7 3258 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 SEC16AO15027 2179 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 IGKV3D-15A0A087WSY6 115 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 A0A1W2PQM1 296 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 OR5B21A6NL26 309 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 IFITM10A6NMD0 228 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 RNF212BA8MTL3 300 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF727A8MUV8 499 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 MBP02144 154 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 GLI4P10075 376 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 CEBPGP53567 150 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 PAX9P55771 341 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 RAB11AP62491 216 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 PRDX4Q13162 271 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 TMEM41BQ5BJD5 291 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF880Q6PDB4 577 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 DBX2Q6ZNG2 339 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 Q6ZPA2 131 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 MRPL21Q7Z2W9 205 aaKnown RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 GGNQ86UU5 652 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 THNSL2Q86YJ6 484 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ODF3L1Q8IXM7 274 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 AGBL5Q8NDL9 886 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 OR10D4PQ8NGN7 298 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 OR2Y1Q8NGV0 311 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 OR10J5Q8NHC4 309 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 RNASEH2CQ8TDP1 164 aaKnown RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 APOBEC3DQ96AK3 386 aaPredicted RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF837Q96EG3 531 aaPredicted RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ADGRG7Q96K78 797 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 JSRP1Q96MG2 331 aaPredicted RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ABHD14AQ9BUJ0 271 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 REPIN1Q9BWE0 567 aaKnown RBP9.44□□□□□ -0.9
LIMS1-207ENST00000422797 SRD5A3Q9H8P0 318 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 SDF2L1Q9HCN8 221 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF581Q9P0T4 197 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 TAAR3PQ9P1P4 343 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 LRFN1Q9P244 771 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 GNG13Q9P2W3 67 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 NAT8Q9UHE5 227 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 CA14Q9ULX7 337 aa9.44□□□□□ -0.9
LIMS1-207ENST00000422797 TGIF2-C20orf24A0A0A6YYL0 155 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 SMCO3A2RU48 225 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 CD300LBA8K4G0 201 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 TMEM250H0YL14 139 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 DVL1O14640 695 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 SYNGR2O43760 224 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 SOX15O60248 233 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF205O95201 554 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 TMEM50AO95807 157 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 UMODP07911 640 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 MYF5P13349 255 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 EDN3P14138 238 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 BCL3P20749 454 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 HAAOP46952 286 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ASCL1P50553 236 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 RPS18P62269 152 aaKnown RBP9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ATP6V1FQ16864 119 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 BRICD5Q6PL45 260 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 REC114Q7Z4M0 266 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF573Q86YE8 665 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 CALHM1Q8IU99 346 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 TMEM217Q8N7C4 229 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 OR10A7Q8NGE5 316 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 NEK7Q8TDX7 302 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 CLDN23Q96B33 292 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 S100PBPQ96BU1 408 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ALKBH3Q96Q83 286 aaPredicted RBP9.43□□□□□ -0.9
LIMS1-207ENST00000422797 PKIBQ9C010 78 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 CDH20Q9HBT6 801 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 CCL28Q9NRJ3 127 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 P4HTMQ9NXG6 502 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 HS3ST3B1Q9Y662 390 aa9.43□□□□□ -0.9
LIMS1-207ENST00000422797 ARID1BQ8NFD5 2236 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 IGKV1D-13A0A0B4J2D9 117 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 LY6G6EA0A0G2JKS1 128 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 MED19A0JLT2 244 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 CXCL13O43927 109 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 TRGC2P03986 189 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 SCTP09683 121 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 TRGC1P0CF51 173 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 IGKV1-13P0DP09 117 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 FGF7P21781 194 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 FOLR3P41439 243 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 RUNX1Q01196 453 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 HERPUD1Q15011 391 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 DAZAP2Q15038 168 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms