RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ESCO2Q56NI9 601 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 VAX1Q5SQQ9 334 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 CD276Q5ZPR3 534 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 ZNF57Q68EA5 555 aaPredicted RBP11.78□□□□□ -0.52
SF3B1-204ENST00000414963 TMEM200BQ69YZ2 307 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 OR52W1Q6IF63 320 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 STEAP1BQ6NZ63 245 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 TCF23Q7RTU1 214 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 KRTAP1-3Q8IUG1 177 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 TPRX1Q8N7U7 411 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 LY6G5BQ8NDX9 201 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 OR4A4PQ8NGN8 299 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 OR13A1Q8NGR1 328 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 SETD6Q8TBK2 473 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 FOXC2Q99958 501 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 C7orf50Q9BRJ6 194 aaKnown RBP11.78□□□□□ -0.52
SF3B1-204ENST00000414963 SSBP3Q9BWW4 388 aaPredicted RBP11.78□□□□□ -0.52
SF3B1-204ENST00000414963 TAF9BQ9HBM6 251 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 ING3Q9NXR8 418 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 TAS2R3Q9NYW6 316 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 KCNIP1Q9NZI2 227 aa11.78□□□□□ -0.52
SF3B1-204ENST00000414963 A0A096LNT2 108 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 KIAA1324LA8MWY0 1029 aaPredicted RBP11.77□□□□□ -0.53
SF3B1-204ENST00000414963 C12orf77C9JDV5 145 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 C15orf65H3BRN8 121 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 FABP7O15540 132 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 CD3DP04234 171 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 GSTT2P0CG29 244 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 USF1P22415 310 aaPredicted RBP11.77□□□□□ -0.53
SF3B1-204ENST00000414963 HLA-DMAP28067 261 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 SEC61A1P61619 476 aaKnown RBP11.77□□□□□ -0.53
SF3B1-204ENST00000414963 GNB2P62879 340 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 HLA-DRB3P79483 266 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 MEF2DQ14814 521 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 CHRFAM7AQ494W8 412 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 Q5PR19 223 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 BTN2A1Q7KYR7 527 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 OVCH2Q7RTZ1 564 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 MRGPRDQ8TDS7 321 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 MAFIPQ8WZ33 124 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 C1orf159Q96HA4 380 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 COX4I2Q96KJ9 171 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 NARFLQ9H6Q4 476 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 HRASLSQ9HDD0 168 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 RAB9BQ9NP90 201 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 C19orf12Q9NSK7 152 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 RPUSD1Q9UJJ7 312 aaKnown RBP11.77□□□□□ -0.53
SF3B1-204ENST00000414963 TBC1D24Q9ULP9 559 aa11.77□□□□□ -0.53
SF3B1-204ENST00000414963 POLR3KQ9Y2Y1 108 aaPredicted RBP11.77□□□□□ -0.53
SF3B1-204ENST00000414963 TRAV39A0A0B4J263 110 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 KBTBD11-OT1A0A1B0GTJ5 212 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 NAP1L6A6NFF2 107 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 ZNF729A6NN14 1252 aaPredicted RBP11.76□□□□□ -0.53
SF3B1-204ENST00000414963 NPIPB11E5RHQ5 1161 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 RAB3DO95716 219 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 FCER2P06734 321 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 HEXAP06865 529 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 SCTP09683 121 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 HRH1P35367 487 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 FAUP35544 74 aaKnown RBP11.76□□□□□ -0.53
SF3B1-204ENST00000414963 DEFA1P59665 94 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 DEFA3P59666 94 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 HTD2P86397 168 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 CDK10Q15131 360 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 C17orf58Q2M2W7 97 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 OR5H2Q8NGV7 314 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 H1FXQ92522 213 aaKnown RBP11.76□□□□□ -0.53
SF3B1-204ENST00000414963 CABLES2Q9BTV7 478 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 NECAP2Q9NVZ3 263 aa11.76□□□□□ -0.53
SF3B1-204ENST00000414963 MALRD1Q5VYJ5 2156 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 LOC105371242A0A075B767 164 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 IGKV1-6A0A0C4DH72 117 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 CENPXA8MT69 81 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 F2RL2O00254 374 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 PHF1O43189 567 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 SPINT2O43291 252 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 FOXH1O75593 365 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 HBZP02008 142 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 ZNF735P0CB33 412 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 ZFP36P26651 326 aaKnown RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 GLP1RP43220 463 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 OR3A3P47888 321 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 DLX6P56179 175 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 ARPC4P59998 168 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 PAX2Q02962 417 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 LOXL1Q08397 574 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 HERPUD1Q15011 391 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 TMEM30BQ3MIR4 351 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 RNASE10Q5GAN6 216 aaKnown RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 DHRS11Q6UWP2 260 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 ARRDC1Q8N5I2 433 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 OR10A7Q8NGE5 316 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 OR4D10Q8NGI6 311 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 OR4C16Q8NGL9 310 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 ARL11Q969Q4 196 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 DACT3Q96B18 629 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 GALMQ96C23 342 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 TINAGL1Q9GZM7 467 aaPredicted RBP11.75□□□□□ -0.53
SF3B1-204ENST00000414963 TOLLIPQ9H0E2 274 aa11.75□□□□□ -0.53
SF3B1-204ENST00000414963 CALYQ9NYX4 217 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 186.4 ms