RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FAM71F2Q6NXP2 309 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 MDP1Q86V88 176 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 TP53INP2Q8IXH6 220 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 OR10D3Q8NH80 312 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 MFRPQ9BY79 579 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 MED29Q9NX70 200 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 CICQ96RK0 1608 aaPredicted RBP11.83□□□□□ -0.51
CCDC88A-204ENST00000413716 GALP22466 123 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 HOXD9P28356 352 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 HDHD3Q9BSH5 251 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 PAXXQ9BUH6 204 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 MGAT2Q10469 447 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 OPN4Q9UHM6 478 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 STARD10Q9Y365 291 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 DNAJC25-GNG10A0A024R161 153 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 C7orf77A4D0Y5 90 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 LINC00862A6NCI5 91 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 IDSB3KWA1 339 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 TAPBPO15533 448 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 CDAP32320 146 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 OTOSQ8NHW6 89 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 WNT9BO14905 357 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 TMPRSS2O15393 492 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 SCAND1P57086 179 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 TNFAIP6P98066 277 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 FRG2CA6NGY1 282 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 CTAG2O75638 210 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 OR8B2Q96RD0 313 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 PITX3O75364 302 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 HIST1H1AQ02539 215 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 TCF23Q7RTU1 214 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 P2RX4Q99571 388 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 COX11Q9Y6N1 276 aa11.83□□□□□ -0.52
CCDC88A-204ENST00000413716 TCF24Q7RTU0 167 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 LRRC29Q8WV35 223 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 A0A1B0GU03 582 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 NXPH1P58417 271 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 DLEU7Q6UYE1 221 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 HS3ST2Q9Y278 367 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 GBF1Q92538 1859 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 NCKAP5O14513 1909 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 WNT1P04628 370 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF83P51522 516 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 NIT1Q86X76 327 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 OR10S1Q8NGN2 331 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF384Q8TF68 577 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 RLN3Q8WXF3 142 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 GPR35Q9HC97 309 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 TARM1B6A8C7 271 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 MKRN2OSH3BPM6 223 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 NEUROG1Q92886 237 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ABHD14BQ96IU4 210 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 TRAV8-2A0A0B4J237 113 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 A0A1W2PQM1 296 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 SEZ6L2Q6UXD5 910 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 OR4D5Q8NGN0 318 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 TM4SF19Q96DZ7 209 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 AICDAQ9GZX7 198 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 FGF20Q9NP95 211 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 HSPB7Q9UBY9 170 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 TRBV7-9A0A0J9YWB2 115 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 CTXND1A0A1B0GTU2 59 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 A1L4Q6 167 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ABLIM3O94929 683 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 RPS20P60866 119 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ECSCRQ19T08 205 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 MORN1Q5T089 497 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 SLC25A42Q86VD7 318 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 MRGPRDQ8TDS7 321 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ASB5Q8WWX0 329 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 MTFP1Q9UDX5 166 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 PPT2Q9UMR5 302 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 HS3ST3A1Q9Y663 406 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 TRAV38-1A0A0B4J264 116 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 SSBP4Q9BWG4 385 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 SMOC1Q9H4F8 434 aa11.82□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF98A6NK75 572 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF252P-AS1Q0IIN9 211 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 IBA57Q5T440 356 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 PAGE4O60829 102 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 SUMO3P55854 103 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM108Q6UXF1 575 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 OR8G5Q8NG78 346 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 OR2V1Q8NHB1 315 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 IGKV3D-11A0A0A0MRZ8 115 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 IGKV3-11P04433 115 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 PYCR3Q53H96 274 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 WFDC3Q8IUB2 231 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 OR1P1Q8NH06 330 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 C20orf27Q9GZN8 174 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 TBL2Q9Y4P3 447 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 C9orf172C9J069 976 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 H3BRM9 83 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 GFRA1P56159 465 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 ANKRD33Q7Z3H0 272 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 CLDN10P78369 228 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 FMODQ06828 376 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 NPFFO15130 113 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 DDB2Q92466 427 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms