RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 COX6A1P12074 109 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 MDH2P40926 338 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 MLF1P58340 268 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 FXYD4P59646 89 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 RAB4BP61018 213 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 NKX6-1P78426 367 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 PSG4Q00888 419 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 DEFA6Q01524 100 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TRA2AQ13595 282 aaKnown RBP eCLIP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 LRRC75BQ2VPJ9 315 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 CEACAM21Q3KPI0 293 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 NCMAPQ5T1S8 102 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TSPO2Q5TGU0 170 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 PCSK4Q6UW60 755 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF818PQ6ZRF7 136 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 CYP2G1PQ6ZSU1 146 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 MRPL52Q86TS9 123 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 GGNQ86UU5 652 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM183AQ8IXX5 376 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 MKXQ8IYA7 352 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF611Q8N823 705 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF784Q8NCA9 323 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 AKR7LQ8NHP1 331 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 RLN3Q8WXF3 142 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 EXTL1Q92935 676 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 RAB24Q969Q5 203 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ACY3Q96HD9 319 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM210BQ96KR6 192 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 OR6C1Q96RD1 312 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 CALHM2Q9HA72 323 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 UFSP2Q9NUQ7 469 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 MRPS17Q9Y2R5 130 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 LY6G6EA0A0G2JKS1 128 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 IGHV5-10-1A0A0J9YXX1 117 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 SSSCA1O60232 199 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 PGLYRP1O75594 196 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 LY86O95711 162 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 IFNA5P01569 189 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 LCATP04180 440 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF32P17041 273 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 GRNP28799 593 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 SSR4P51571 173 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 HERPUD1Q15011 391 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 JOSD1Q15040 202 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF324BQ6AW86 544 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 SLC25A26Q70HW3 274 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ZFP62Q8NB50 900 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 OR5A2Q8NGI9 324 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ABHD5Q8WTS1 349 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM216AQ8WUB2 273 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 NOL4LQ96MY1 436 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 IMMP2LQ96T52 175 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 FOXB1Q99853 325 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 C2orf88Q9BSF0 95 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TPSD1Q9BZJ3 242 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 PKIBQ9C010 78 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 PARP12Q9H0J9 701 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2W1Q9Y3N9 320 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 HS3ST3B1Q9Y662 390 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 U3KQA8 63 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 KIAA0100Q14667 2235 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 J3QW42 95 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 WISP2O76076 250 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 YIF1AO95070 293 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 VENTXO95231 258 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 GCGP01275 180 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 EDN3P14138 238 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 EN2P19622 333 aaPredicted RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 EPHA1P21709 976 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 NDUFA6P56556 154 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 HBG1P69891 147 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 HBG2P69892 147 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ATP6V1FQ16864 119 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF674Q2M3X9 581 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM41BQ5BJD5 291 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CXorf66Q5JRM2 361 aaPredicted RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 WDR25Q64LD2 544 aaPredicted RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF774Q6NX45 483 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CLEC9AQ6UXN8 241 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SHISA6Q6ZSJ9 500 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 TCTEX1D1Q8N7M0 179 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 NAT6Q93015 286 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SLAMF9Q96A28 289 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 C14orf144Q96I85 54 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SRXN1Q9BYN0 137 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF442Q9H7R0 627 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 GPR35Q9HC97 309 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 P4HTMQ9NXG6 502 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 NAT8Q9UHE5 227 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 UNC13CQ8NB66 2214 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ARHGAP21Q5T5U3 1957 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SEC16AO15027 2179 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 C9J4A7 227 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 TSTD3H0UI37 97 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 J3KRW8 73 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CHST1O43916 411 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CNOT4O95628 575 aaKnown RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 PFN1P07737 140 aaKnown RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SOD3P08294 240 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 TRGC1P0CF51 173 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms