RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CDX2Q99626 313 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-204ENST00000412061 NIPSNAP1Q9BPW8 284 aa3.13□□□□□ -1.91
BRCA1-204ENST00000412061 TMEM109Q9BVC6 243 aa3.13□□□□□ -1.91
BRCA1-204ENST00000412061 ZSCAN16Q9H4T2 348 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-204ENST00000412061 C11orf49Q9H6J7 331 aa3.13□□□□□ -1.91
BRCA1-204ENST00000412061 PLEKHF2Q9H8W4 249 aa3.13□□□□□ -1.91
BRCA1-204ENST00000412061 NYAP2Q9P242 653 aa3.13□□□□□ -1.91
BRCA1-204ENST00000412061 YTHDF2Q9Y5A9 579 aaKnown RBP3.13□□□□□ -1.91
BRCA1-204ENST00000412061 KMT2EQ8IZD2 1858 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 COL2A1P02458 1487 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 WI2-2373I1.2A0A1W2PRP0 233 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 GOLGA6L4A6NEF3 574 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 D6RAR5 112 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 LGALS9O00182 355 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 COPEO14579 308 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 CHST10O43529 356 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 TCF21O43680 179 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 SLC37A4O43826 429 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 PLIN3O60664 434 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 HAND1O96004 215 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 CD36P16671 472 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 MP68P56378 58 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 DAD1P61803 113 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 IGLV3-21P80748 117 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 EMX1Q04741 257 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 IHHQ14623 411 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 ELOCQ15369 112 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 IL17AQ16552 155 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 ZNF239Q16600 458 aaKnown RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 MOGQ16653 247 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 LIN52Q52LA3 116 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 TRMT12Q53H54 448 aaKnown RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 N4BP2L1Q5TBK1 243 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 SPINK14Q6IE38 97 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 NEGR1Q7Z3B1 354 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 TAC4Q86UU9 113 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 ARIH2OSQ8N7S6 290 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 OR5K1Q8NHB7 308 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 YIPF5Q969M3 257 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 SLC35B4Q969S0 331 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 TMA16Q96EY4 203 aaKnown RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 SIGMAR1Q99720 223 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 ZNF717Q9BY31 904 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 C8orf4Q9NR00 106 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 UBQLN4Q9NRR5 601 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 PLSCR3Q9NRY6 295 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 SLC7A10Q9NS82 523 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 DDX19AQ9NUU7 478 aaKnown RBP3.12□□□□□ -1.91
BRCA1-204ENST00000412061 PRELID3BQ9Y3B1 194 aa3.12□□□□□ -1.91
BRCA1-204ENST00000412061 CARMIL3Q8ND23 1372 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 A0A087WUJ7 227 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 IGHV5-10-1A0A0J9YXX1 117 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 LOC105371267A0A1B0GV96 52 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 A0A1B0GVX0 72 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 GNG14A0A1W2PPG7 69 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 TMEM72A0PK05 275 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 A6NDX4 124 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 DISC1C4P0D8 188 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 ZNF878C9JN71 531 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 PHOX2AO14813 284 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 KLRC4O43908 158 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 IGHV3-11P01762 117 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 CRYBA1P05813 215 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 TLX1NBP0CAT3 122 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 PSG2P11465 335 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 ZBTB25P24278 435 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 ELK4P28324 431 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 FAM78AQ5JUQ0 283 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 HENMT1Q5T8I9 393 aaKnown RBP3.11□□□□□ -1.91
BRCA1-204ENST00000412061 TRIQKQ629K1 86 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 ADAMTS13Q76LX8 1427 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 FA2HQ7L5A8 372 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 SLC16A13Q7RTY0 426 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 CALHM3Q86XJ0 350 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 PDPNQ86YL7 162 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 DOLPP1Q86YN1 238 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 Q8N9W7 124 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 FAM57AQ8TBR7 257 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 BTF3L4Q96K17 158 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 SLC35E1Q96K37 410 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 OR2A5Q96R48 311 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 MED18Q9BUE0 208 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 GNB1LQ9BYB4 327 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 C12orf10Q9HB07 376 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 C8orf17Q9NRJ1 99 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 TMEM216Q9P0N5 145 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 VPREB3Q9UKI3 123 aa3.11□□□□□ -1.91
BRCA1-204ENST00000412061 GPATCH8Q9UKJ3 1502 aaKnown RBP3.11□□□□□ -1.91
BRCA1-204ENST00000412061 LRP4O75096 1905 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 NOS1P29475 1434 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 IGHV3-72A0A0B4J1Y9 119 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 NOS1APO75052 506 aaPredicted RBP3.1□□□□□ -1.91
BRCA1-204ENST00000412061 SRSF10O75494 262 aaKnown RBP3.1□□□□□ -1.91
BRCA1-204ENST00000412061 OR2B3O76000 313 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 YIF1AO95070 293 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 SNRPAP09012 282 aaKnown RBP3.1□□□□□ -1.91
BRCA1-204ENST00000412061 ZNF688P0C7X2 276 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 CD79AP11912 226 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 ADRB3P13945 408 aa3.1□□□□□ -1.91
BRCA1-204ENST00000412061 NELFEP18615 380 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms