RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 HLA-DMAP28067 261 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 LOXL1Q08397 574 aaPredicted RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 C11orf91Q3C1V1 193 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 CHRFAM7AQ494W8 412 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 KIAA2026Q5HYC2 2103 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 OR52W1Q6IF63 320 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 Q6ZPA2 131 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 UBALD1Q8TB05 177 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 ARL11Q969Q4 196 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 MBNL3Q9NUK0 354 aaKnown RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 TAS2R8Q9NYW2 309 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 UBE2J1Q9Y385 318 aaPredicted RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 RBMX2Q9Y388 322 aaKnown RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 A0A1W2PPH5 198 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 KIAA1324LA8MWY0 1029 aaPredicted RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 A8MXK9 166 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 ZNF736B4DX44 427 aaPredicted RBP14.92□□□□□ -0.02
SDC1-203ENST00000403076 C22orf46C9J442 243 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 SPINT2O43291 252 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 CSF1P09603 554 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 ARPC4P59998 168 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 HLA-DRB3P79483 266 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 ZNF273Q14593 569 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 SRSF7Q16629 238 aaKnown RBP eCLIP14.92□□□□□ -0.02
SDC1-203ENST00000403076 C16orf87Q6PH81 154 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 TOMM5Q8N4H5 51 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 MAPK1IP1LQ8NDC0 245 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 RFESDQ8TAC1 157 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 CORO2AQ92828 525 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 CALYQ9NYX4 217 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 ANXA10Q9UJ72 324 aa14.92□□□□□ -0.02
SDC1-203ENST00000403076 MED13LQ71F56 2210 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 IGKV1D-8A0A087WSZ0 117 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 A0A096LNT2 108 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 LINC00854A0A1B0GVQ3 168 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 ZNF729A6NN14 1252 aaPredicted RBP14.91□□□□□ -0.02
SDC1-203ENST00000403076 C12orf77C9JDV5 145 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 FABP7O15540 132 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 ENSAO43768 121 aaKnown RBP14.91□□□□□ -0.02
SDC1-203ENST00000403076 LIPFP07098 398 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 GSTT2P0CG29 244 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 ZNF728P0DKX0 622 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 CCL3L1P16619 93 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 OR3A3P47888 321 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 AP3S2P59780 193 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 Q6ZS49 121 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 C5orf24Q7Z6I8 188 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 IL1F10Q8WWZ1 152 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 SNAPC3Q92966 411 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 BORCS5Q969J3 196 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 TRIM63Q969Q1 353 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 ZNF714Q96N38 554 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 GAL3ST2Q9H3Q3 398 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 RAB9BQ9NP90 201 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 TAS2R3Q9NYW6 316 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 ANAPC10Q9UM13 185 aa14.91□□□□□ -0.02
SDC1-203ENST00000403076 UPK1BO75841 260 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 HBZP02008 142 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 SCTP09683 121 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 NAT1P18440 290 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 SSTR5P35346 364 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 TAS2R19P59542 299 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 HMGN3Q15651 99 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 TCF23Q7RTU1 214 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 ZNF554Q86TJ5 538 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 LYSMD2Q8IV50 215 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 TMEM229BQ8NBD8 167 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 OR5H2Q8NGV7 314 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 OR1L1Q8NH94 360 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 C8orf46Q8TAG6 207 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 ONECUT1Q9UBC0 465 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 OPN4Q9UHM6 478 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 PDZD2O15018 2839 aa14.9□□□□□ -0.02
SDC1-203ENST00000403076 KBTBD11-OT1A0A1B0GTJ5 212 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 ANKRD20A5PA0PJZ0 165 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 PMP2P02689 132 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 CD3DP04234 171 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 TAS2R46P59540 309 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 LTC4SQ16873 150 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 CR1LQ2VPA4 569 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 LY6G5BQ8NDX9 201 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 OR5AP2Q8NGF4 316 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 OR4A4PQ8NGN8 299 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 GALMQ96C23 342 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 KIRREL1Q96J84 757 aa14.89□□□□□ -0.03
SDC1-203ENST00000403076 ZNF107Q9UII5 783 aaPredicted RBP14.89□□□□□ -0.03
SDC1-203ENST00000403076 B4DSR2 109 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 C15orf65H3BRN8 121 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 BET1O15155 118 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 HSPA12AO43301 675 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 RAB3DO95716 219 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 AKAIN1P0CW23 69 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 CGB3P0DN86 165 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 CGB7P0DN87 165 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 HRH1P35367 487 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 C17orf58Q2M2W7 97 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 ACTBL2Q562R1 376 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 RNASE10Q5GAN6 216 aaKnown RBP14.88□□□□□ -0.03
SDC1-203ENST00000403076 STEAP1BQ6NZ63 245 aa14.88□□□□□ -0.03
SDC1-203ENST00000403076 BTNL3Q6UXE8 466 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms