RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.42□□□□□ -0.42
RTF1-201ENST00000389629 VASH2Q86V25 355 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 H1FOOQ8IZA3 346 aaPredicted RBP12.42□□□□□ -0.42
RTF1-201ENST00000389629 C11orf42Q8N5U0 333 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 HIST1H2BHQ93079 126 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 MRGPRFQ96AM1 343 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 FOXB1Q99853 325 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 HIST1H2BNQ99877 126 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 HIST1H2BMQ99879 126 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 CHST5Q9GZS9 411 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 TUBA4BQ9H853 241 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 GYPAP02724 150 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 IGHV4-34P06331 123 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 CCL2P13500 99 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 CDC34P49427 236 aaPredicted RBP12.42□□□□□ -0.42
RTF1-201ENST00000389629 ZP4Q12836 540 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 HLA-CQ95604 372 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 SCN8AQ9UQD0 1980 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 CD5P06127 495 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 MELTFP08582 738 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 AGAP20933 346 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 TCL1AP56279 114 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 IGLV3-21P80748 117 aaPredicted RBP12.42□□□□□ -0.42
RTF1-201ENST00000389629 HIKESHIQ53FT3 197 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 KDF1Q8NAX2 398 aaPredicted RBP12.42□□□□□ -0.42
RTF1-201ENST00000389629 OR5AU1Q8NGC0 362 aa12.42□□□□□ -0.42
RTF1-201ENST00000389629 SNRPCP09234 159 aaKnown RBP12.41□□□□□ -0.42
RTF1-201ENST00000389629 C1QL2Q7Z5L3 287 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 AGBL5Q8NDL9 886 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 CLDN15P56746 228 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 CTAG1AP78358 180 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 IZUMO4Q1ZYL8 232 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 SPATA46Q5T0L3 261 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 FLVCR1-AS1Q8TAF5 88 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 TMEM204Q9BSN7 226 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 TPPP3Q9BW30 176 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 C12orf49Q9H741 205 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 ATXN7O15265 892 aaPredicted RBP12.41□□□□□ -0.42
RTF1-201ENST00000389629 PIAS2O75928 621 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 OR3A1P47881 315 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 LYSMD4Q5XG99 296 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 SLC24A4Q8NFF2 622 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 RAB24Q969Q5 203 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 MSI2Q96DH6 328 aaKnown RBP12.41□□□□□ -0.42
RTF1-201ENST00000389629 STARD4Q96DR4 205 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 LYRM2Q9NU23 88 aaPredicted RBP12.41□□□□□ -0.42
RTF1-201ENST00000389629 MPDZO75970 2070 aa12.41□□□□□ -0.42
RTF1-201ENST00000389629 FOLR2P14207 255 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 HLA-GP17693 338 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 LSM6P62312 80 aaKnown RBP12.4□□□□□ -0.42
RTF1-201ENST00000389629 SMAD4Q13485 552 aaKnown RBP12.4□□□□□ -0.42
RTF1-201ENST00000389629 TMPRSS7Q7RTY8 843 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 OR5B3Q8NH48 314 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 SGMS2Q8NHU3 365 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 TMEM230Q96A57 120 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 CIB3Q96Q77 187 aaPredicted RBP12.4□□□□□ -0.42
RTF1-201ENST00000389629 HSPB9Q9BQS6 159 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 ANAPC16Q96DE5 110 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 UCN2Q96RP3 112 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 RNF24Q9Y225 148 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 CXCL12P48061 93 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 SPCS3P61009 180 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 EXT1Q16394 746 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 SP7Q8TDD2 431 aaPredicted RBP12.4□□□□□ -0.42
RTF1-201ENST00000389629 BOKQ9UMX3 212 aaPredicted RBP12.4□□□□□ -0.42
RTF1-201ENST00000389629 ZNF253O75346 499 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 CEACAM6P40199 344 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 CRISPLD2Q9H0B8 497 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 TINAGQ9UJW2 476 aa12.4□□□□□ -0.42
RTF1-201ENST00000389629 C9JQL5 133 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 FAM157CP0CG43 387 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 ARG2P78540 354 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 FHL1Q13642 323 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 KMT5CQ86Y97 462 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 RTN4RQ9BZR6 473 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 RIMS4Q9H426 269 aaPredicted RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 CER1O95813 267 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 SRP19P09132 144 aaKnown RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 CCL20P78556 96 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 TMEM183AQ8IXX5 376 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 TCTEX1D1Q8N7M0 179 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 ZNF784Q8NCA9 323 aaPredicted RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 PPP1R35Q8TAP8 253 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 KLHDC3Q9BQ90 382 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 ZNF552Q9H707 407 aaPredicted RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 BET1LQ9NYM9 111 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 PSG2P11465 335 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 COL5A1-AS1Q5SY13 56 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 OR10V1Q8NGI7 309 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 OR10G8Q8NGN5 311 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 C5orf67F2Z3F1 127 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 HRASP01112 189 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 IER3P46695 156 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 DSCR4P56555 118 aaPredicted RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 HEPN1Q6WQI6 88 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 ZNF573Q86YE8 665 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 PAQR4Q8N4S7 273 aaPredicted RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 GALNT14Q96FL9 552 aa12.39□□□□□ -0.43
RTF1-201ENST00000389629 ZNF385AQ96PM9 386 aaKnown RBP12.39□□□□□ -0.43
RTF1-201ENST00000389629 GINS3Q9BRX5 216 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms