RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 THNSL2Q86YJ6 484 aa17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 JAGN1Q8N5M9 183 aa17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 OR5AU1Q8NGC0 362 aa17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 TFAP2CQ92754 450 aa17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 MRPS28Q9Y2Q9 187 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 C15orf65H3BRN8 121 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 PIN1P1O15428 100 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 MAS1P04201 325 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM106CPP0CH98 169 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 CD83Q01151 205 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 MADCAM1Q13477 382 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 GLIPR1L1Q6UWM5 242 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 LYPD6Q86Y78 171 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 MRPS24Q96EL2 167 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 VCXQ9H320 206 aa17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 RCC2Q9P258 522 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-201ENST00000373602 PLXNB1O43157 2135 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 A0A1W2PPI3 338 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 ANKRD65E5RJM6 399 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 M0QZK8 103 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 LPLP06858 475 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 GNG10P50151 68 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 RAB7AP51149 207 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 DIAPH2-AS1Q14236 149 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 SAMD5Q5TGI4 173 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 OR4F17Q8NGA8 305 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 OR52M1Q8NGK5 317 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 NEK7Q8TDX7 302 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 OR4F4Q96R69 305 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 SPACA1Q9HBV2 294 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 ERGIC3Q9Y282 383 aa17.29■□□□□ 0.36
CCDC28B-201ENST00000373602 G3V4G9 280 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 ORC5O43913 435 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 MT-ND4P03905 459 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 SNRNP70P08621 437 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 BEAN1Q3B7T3 259 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 RNLSQ5VYX0 342 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 AWAT2Q6E213 333 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 ZNF497Q6ZNH5 498 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 CENPVQ7Z7K6 275 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 OR8H3Q8N146 312 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 DRAM1Q8N682 238 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 OR10X1Q8NGY0 326 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 OR56B4Q8NH76 319 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 CCDC107Q8WV48 283 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 THRSPQ92748 146 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 ARL11Q969Q4 196 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 R3HDM4Q96D70 268 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 DCLRE1BQ9H816 532 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 MOB4Q9Y3A3 225 aa17.28■□□□□ 0.36
CCDC28B-201ENST00000373602 A0A1W2PPE3 182 aa17.27■□□□□ 0.36
CCDC28B-201ENST00000373602 SH2D7A6NKC9 451 aaPredicted RBP17.27■□□□□ 0.36
CCDC28B-201ENST00000373602 MAPK3P27361 379 aaPredicted RBP17.27■□□□□ 0.36
CCDC28B-201ENST00000373602 KPRPQ5T749 579 aaPredicted RBP17.27■□□□□ 0.36
CCDC28B-201ENST00000373602 NKAIN3Q8N8D7 197 aa17.27■□□□□ 0.36
CCDC28B-201ENST00000373602 MCRIP1C9JLW8 97 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 AIPO00170 330 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 CDK1P06493 297 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 LOXL3P58215 753 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 TCTEX1D4Q5JR98 221 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 LINC00311Q8N616 119 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 UQCC2Q9BRT2 126 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 BANF2Q9H503 90 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 GFOD1Q9NXC2 390 aa17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 NKX1-2Q9UD57 310 aaPredicted RBP17.26■□□□□ 0.35
CCDC28B-201ENST00000373602 FAM90A10PA6NDY2 464 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 FAM90A7PA6NKC0 464 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 FAM90A23PA8MXZ1 464 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 SDCBPO00560 298 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 MGMTP16455 207 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 ZNF816Q0VGE8 651 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 C9orf152Q5JTZ5 239 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 C6orf141Q5SZD1 244 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 RAB12Q6IQ22 244 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 UNQ9370/PRO34162Q6UXP9 181 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 GAPTQ8N292 157 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 C8orf31Q8N9H6 132 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 TMEM104Q8NE00 496 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 UBALD1Q8TB05 177 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 MND1Q9BWT6 205 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 SELENOIQ9C0D9 397 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 ETAA1Q9NY74 926 aa17.25■□□□□ 0.35
CCDC28B-201ENST00000373602 HSD17B6O14756 317 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 TMEM11P17152 192 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 HES1Q14469 280 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 Q3ZCU0 254 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 SYT6Q5T7P8 510 aaPredicted RBP17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 MS4A15Q8N5U1 240 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 Q96M66 194 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 PEX16Q9Y5Y5 336 aa17.24■□□□□ 0.35
CCDC28B-201ENST00000373602 IGHV3-43A0A0B4J1X8 118 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 C12orf77C9JDV5 145 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 PTGES3LE9PB15 166 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 FGF16O43320 207 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 CRTAPO75718 401 aaPredicted RBP17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 SC5DO75845 299 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 IGKV1D-33P01593 117 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 IGKV1-33P01594 117 aa17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 GAPDHP04406 335 aaKnown RBP17.23■□□□□ 0.35
CCDC28B-201ENST00000373602 GLAP06280 429 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms