RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 LIAT1Q6ZQX7 453 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 MRGPRGQ86SM5 289 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 NECAP1Q8NC96 275 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 SMIM7Q9BQ49 75 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 RNF115Q9Y4L5 304 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 NCOR1O75376 2440 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF705GA8MUZ8 300 aaPredicted RBP12.89□□□□□ -0.35
COL17A1-201ENST00000353479 LY86O95711 162 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 PRF1P14222 555 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 KLF9Q13886 244 aaPredicted RBP12.89□□□□□ -0.35
COL17A1-201ENST00000353479 PRR27Q6MZM9 219 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 HOGA1Q86XE5 327 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 TMEM147Q9BVK8 224 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF331Q9NQX6 463 aaPredicted RBP12.89□□□□□ -0.35
COL17A1-201ENST00000353479 RAXQ9Y2V3 346 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 MPPED2Q15777 294 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 TMEM65Q6PI78 240 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 PTX4Q96A99 478 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 RASL11BQ9BPW5 248 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 GOSR1O95249 250 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 NSUN5P2Q63ZY6 315 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 PRSS54Q6PEW0 395 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 ADAD2Q8NCV1 583 aaKnown RBP12.89□□□□□ -0.35
COL17A1-201ENST00000353479 MESP1Q9BRJ9 268 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 CRYBA2P53672 197 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF79Q15937 498 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 BAGE3Q86Y29 109 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 BAGE2Q86Y30 109 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 PIPOXQ9P0Z9 390 aa12.89□□□□□ -0.35
COL17A1-201ENST00000353479 OR2H2O95918 312 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 FCGR3AP08637 254 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 Q6ZT83 130 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 LINC01560Q8TB33 94 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 FLYWCH2Q96CP2 140 aaKnown RBP12.88□□□□□ -0.35
COL17A1-201ENST00000353479 C14orf79Q96F83 325 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 COA4Q9NYJ1 87 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 LPAR3Q9UBY5 353 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF107Q9UII5 783 aaPredicted RBP12.88□□□□□ -0.35
COL17A1-201ENST00000353479 TXNL1O43396 289 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 C10orf128Q5T292 105 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 OR5M8Q8NGP6 311 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 HARBI1Q96MB7 349 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 TUBG2Q9NRH3 451 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 ZDHHC8Q9ULC8 765 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 MGST3O14880 152 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 CEBPDP49716 269 aaPredicted RBP12.88□□□□□ -0.35
COL17A1-201ENST00000353479 MRGPRFQ96AM1 343 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 HSD17B10Q99714 261 aaKnown RBP12.88□□□□□ -0.35
COL17A1-201ENST00000353479 DOK5Q9P104 306 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 G6PCP35575 357 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 G6PC2Q9NQR9 355 aa12.88□□□□□ -0.35
COL17A1-201ENST00000353479 THADAQ6YHU6 1953 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 CLEC9AQ6UXN8 241 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 SLC25A42Q86VD7 318 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF714Q96N38 554 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 PRDM14Q9GZV8 571 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 LOC102723996A0A087X1L8 192 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 SYNGR2O43760 224 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF90Q03938 601 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 FNDC7Q5VTL7 733 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 FADS6Q8N9I5 356 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 MRPL24Q96A35 216 aaKnown RBP12.87□□□□□ -0.35
COL17A1-201ENST00000353479 C1RLQ9NZP8 487 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 CYB5R3P00387 301 aaPredicted RBP12.87□□□□□ -0.35
COL17A1-201ENST00000353479 COX5BP10606 129 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 VDAC1P21796 283 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 LGALS7P47929 136 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 TEX261Q6UWH6 196 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 NKX6-2Q9C056 277 aaPredicted RBP12.87□□□□□ -0.35
COL17A1-201ENST00000353479 U3KQ87 197 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF708P17019 499 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 NEURL2Q9BR09 285 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 LPAR5Q9H1C0 372 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 NPIPB13A6NJU9 1138 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 NPIPB4C9JG80 1138 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 PLA2G10O15496 165 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 OR2C1O95371 312 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 APELAP0DMC3 54 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 FAM27E3Q08E93 113 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 AARDQ4LEZ3 155 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 OR52L2PQ8NGH6 319 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 OR10Z1Q8NGY1 313 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 FBXL17Q9UF56 701 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 KCNK7Q9Y2U2 307 aa12.87□□□□□ -0.35
COL17A1-201ENST00000353479 MED19A0JLT2 244 aaPredicted RBP12.86□□□□□ -0.35
COL17A1-201ENST00000353479 CRHP06850 196 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 FAM3AP98173 230 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 OR4D10Q8NGI6 311 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 CHST1O43916 411 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 PSG2P11465 335 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 TMEM45BQ96B21 275 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 RAB19A4D1S5 217 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 CNN1P51911 297 aaKnown RBP12.86□□□□□ -0.35
COL17A1-201ENST00000353479 OR5I1Q13606 314 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 OR5B3Q8NH48 314 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 LINC00470Q9BZP3 86 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 AAMDCQ9H7C9 122 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 KLF4O43474 513 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms