RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RBM11P57052 281 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 NXPH1P58417 271 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 RIGQ13278 110 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 RIPPLY2Q5TAB7 128 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 TUBD1Q9UJT1 453 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 CARHSP1Q9Y2V2 147 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 FAM221AA4D161 298 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 RNF151Q2KHN1 245 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 MELTFP08582 738 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 TMEM50BP56557 158 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 CBLN2Q8IUK8 224 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 ESRP2Q9H6T0 727 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 OR5AC2Q9NZP5 309 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 KIAA1324LA8MWY0 1029 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 J3QT63 122 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 SEMA7AO75326 666 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 COL5A1-AS1Q5SY13 56 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 CBLN3Q6UW01 205 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 SCARF2Q96GP6 870 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF355PQ9NSJ1 428 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 OR1A1Q9P1Q5 309 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 KLK13Q9UKR3 277 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 A8MXK9 166 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 H0Y8G0 127 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 ZNF250P15622 560 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 SMUG1Q53HV7 270 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 WDR31Q8NA23 367 aa9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 SF3B6Q9Y3B4 125 aaKnown RBP9.03□□□□□ -0.96
CCDC88A-202ENST00000336838 M0R1X1 148 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 PPM1DO15297 605 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 DANCRP0C864 163 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 KLF3P57682 345 aaPredicted RBP9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 GVQW1Q8N7I0 195 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 C8orf44Q96CB5 159 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 CISD1Q9NZ45 108 aaKnown RBP9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 IL36GQ9NZH8 169 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 GOLT1BQ9Y3E0 138 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 GLI4P10075 376 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 LSM10Q969L4 123 aaKnown RBP9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 PIPOXQ9P0Z9 390 aa9.02□□□□□ -0.96
CCDC88A-202ENST00000336838 PMCHL1Q16048 86 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 ACER2Q5QJU3 275 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 MOB3AQ96BX8 217 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 H3BP45 60 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 PMELP40967 661 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 PTTG1IPP53801 180 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 ERVH48-1M5A8F1 160 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 ADAP1O75689 374 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 TEPPQ6URK8 271 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 HELTA6NFD8 242 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 CHST1O43916 411 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 ANKRD55Q3KP44 614 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 OR1L6Q8NGR2 347 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 RASL10BQ96S79 203 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 ANKRD10Q9NXR5 420 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 NDUFB3O43676 98 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 OPRK1P41145 380 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC25A22Q9H936 323 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 SERGEFQ9UGK8 458 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 GVINP1Q7Z2Y8 2422 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 TMEM250H0YL14 139 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 Q6ZN92 141 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 R3HDM4Q96D70 268 aa9.02□□□□□ -0.97
CCDC88A-202ENST00000336838 EPHA8P29322 1005 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 SELENOTP62341 195 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 RPS4XP62701 263 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 ALPK3Q96L96 1907 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 TRAV9-1A0A075B6T8 112 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 VENTXO95231 258 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 IGHV3-9P01782 118 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 LIFP15018 202 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 NANOS3P60323 173 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 PMP22Q01453 160 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 FZD5Q13467 585 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 C12orf54Q6X4T0 127 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF721Q8TF20 911 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 ACACAQ13085 2346 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 VSIG10L2P0DP72 767 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 BCL3P20749 454 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 ACP1P24666 158 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 TSPAN7P41732 249 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 NRN1LQ496H8 165 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 INO80CQ6PI98 192 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 SAP30LQ9HAJ7 183 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 A0A087WWC5 75 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 K7ERU9 68 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 PMCHP20382 165 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 GAPTQ8N292 157 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 IL19Q9UHD0 177 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 GPR132Q9UNW8 380 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF835Q9Y2P0 537 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 KCNK7Q9Y2U2 307 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 IFNL4K9M1U5 179 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 FAM157BP0CG42 384 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 HTR1DP28221 377 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 CCL7P80098 99 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 FAM78BQ5VT40 261 aa9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 RNASEKQ6P5S7 137 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 PTPMT1Q8WUK0 201 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-202ENST00000336838 GRAMD2BQ96HH9 432 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms