RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 EMC4Q5J8M3 183 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 OR4C5Q8NGB2 326 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 SPIN2AQ99865 258 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 SPIN2BQ9BPZ2 258 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 COL6A6A6NMZ7 2263 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ZNF407Q9C0G0 2248 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TRAV34A0A0B4J273 112 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TRAV17A0A0B4J275 112 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 CARD18P57730 90 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 ARL6IP1Q15041 203 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TSPO2Q5TGU0 170 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 RTL6Q6ICC9 239 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TECTBQ96PL2 329 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TP53RKQ96S44 253 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 MEOX1P50221 254 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 MYBPHQ13203 477 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TMEM183BQ1AE95 376 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 OR2C3Q8N628 320 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 OR5C1Q8NGR4 320 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 ABHD14AQ9BUJ0 271 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 OR51I2Q9H344 312 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 CHCHD2Q9Y6H1 151 aaPredicted RBP9.47□□□□□ -0.89
LSM3-201ENST00000306024 HSPB1P04792 205 aaKnown RBP9.47□□□□□ -0.89
LSM3-201ENST00000306024 PTGER4P35408 488 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 TNFSF10P50591 281 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 DAP3P51398 398 aaKnown RBP9.47□□□□□ -0.89
LSM3-201ENST00000306024 VAX1Q5SQQ9 334 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 ZNF684Q5T5D7 378 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 LEMD1Q68G75 181 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.47□□□□□ -0.89
LSM3-201ENST00000306024 ZNF709Q8N972 641 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 ANGPTL4Q9BY76 406 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 HES7Q9BYE0 225 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 ACTR3CQ9C0K3 210 aaPredicted RBP9.47□□□□□ -0.89
LSM3-201ENST00000306024 KLHL13Q9P2N7 655 aa9.47□□□□□ -0.89
LSM3-201ENST00000306024 PRSS37A4D1T9 235 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 HPRT1P00492 218 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 S100A7P31151 101 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 OPRM1P35372 400 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 SUCLG1P53597 346 aaKnown RBP9.46□□□□□ -0.89
LSM3-201ENST00000306024 RANP62826 216 aaKnown RBP9.46□□□□□ -0.89
LSM3-201ENST00000306024 Q0VFX4 171 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 LYZL2Q7Z4W2 148 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 CCDC71LQ8N9Z2 235 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 OR51E1Q8TCB6 317 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 PTX4Q96A99 478 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 EMC6Q9BV81 110 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 CHST11Q9NPF2 352 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 VAX2Q9UIW0 290 aa9.46□□□□□ -0.89
LSM3-201ENST00000306024 A0A1W2PNV4 684 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 FAM157AC9JC47 383 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 CXCL13O43927 109 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 ZNF205O95201 554 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 MPZL1O95297 269 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 SRD5A2P31213 254 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 RUNX1Q01196 453 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 EWSR1Q01844 656 aaKnown RBP eCLIP9.46□□□□□ -0.9
LSM3-201ENST00000306024 ENDOGQ14249 297 aaKnown RBP9.46□□□□□ -0.9
LSM3-201ENST00000306024 FDCSPQ8NFU4 85 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 MCTS1Q9ULC4 181 aaKnown RBP9.46□□□□□ -0.9
LSM3-201ENST00000306024 MPDZO75970 2070 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 HSD17B6O14756 317 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 FKBP2P26885 142 aaKnown RBP9.46□□□□□ -0.9
LSM3-201ENST00000306024 ECI1P42126 302 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 RAB7AP51149 207 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 FGF8P55075 233 aaPredicted RBP9.46□□□□□ -0.9
LSM3-201ENST00000306024 BIDP55957 195 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 CATSPERDQ86XM0 798 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 FAM122AQ96E09 287 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 GINS3Q9BRX5 216 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 ARV1Q9H2C2 271 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 RNF24Q9Y225 148 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 CACNA1BQ00975 2339 aa9.46□□□□□ -0.9
LSM3-201ENST00000306024 IGHV3-15A0A0B4J1V0 119 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 CHRNB4P30926 498 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 RPL27P61353 136 aaKnown RBP9.45□□□□□ -0.9
LSM3-201ENST00000306024 IL13RA2Q14627 380 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 VAMP3Q15836 100 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 PLPPR5Q32ZL2 321 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 ZNF774Q6NX45 483 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 BAGE3Q86Y29 109 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 BAGE2Q86Y30 109 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 OR2M7Q8NG81 312 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 BTF3L4Q96K17 158 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 OR51B6Q9H340 312 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 MED29Q9NX70 200 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 WDFY4Q6ZS81 3184 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 A0A1W2PP11 408 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 ZNF320A2RRD8 509 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 TNFSF11O14788 317 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 SP1P08047 785 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 IRF2P14316 349 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 CTLA4P16410 223 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 CLDN17P56750 224 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 MFAP5Q13361 173 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 C1orf100Q5SVJ3 147 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 DPPA3Q6W0C5 159 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 ZNF845Q96IR2 970 aaPredicted RBP9.45□□□□□ -0.9
LSM3-201ENST00000306024 SIGLEC12Q96PQ1 595 aa9.45□□□□□ -0.9
LSM3-201ENST00000306024 CIB3Q96Q77 187 aaPredicted RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms