RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 FCGR2CP31995 323 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 MDH2P40926 338 aaKnown RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 CD200P41217 278 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 KIR2DS4P43632 304 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 KIR2DS1Q14954 304 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 PAN3Q58A45 887 aaKnown RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 LY6G6FQ5SQ64 297 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 TLN1Q9Y490 2541 aaKnown RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 PLSCR5A0PG75 271 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 SLC33A1O00400 549 aaPredicted RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 SLC31A2O15432 143 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 CTSDP07339 412 aaPredicted RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 ETFRF1Q6IPR1 90 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 NUP37Q8NFH4 326 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 FXYD6Q9H0Q3 95 aa12.05□□□□□ -0.48
C9orf3-202ENST00000297979 CLEC4MQ9H2X3 399 aaPredicted RBP12.05□□□□□ -0.48
C9orf3-202ENST00000297979 hCG_1807616A0A1W2PRN6 198 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 RGS11O94810 467 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 ZNF205O95201 554 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 THBDP07204 575 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 SELENOVP59797 346 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 CLEC18BQ6UXF7 455 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 GLS2Q9UI32 602 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 ATP23Q9Y6H3 246 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 MARCH11A6NNE9 402 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 TRDCB7Z8K6 153 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 HAND1O96004 215 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 KNG1P01042 644 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 HLA-GP17693 338 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 SNRPD2P62316 118 aaKnown RBP12.04□□□□□ -0.48
C9orf3-202ENST00000297979 SUPT4H1P63272 117 aaKnown RBP12.04□□□□□ -0.48
C9orf3-202ENST00000297979 SSX9Q7RTT3 188 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 TOMM40LQ969M1 308 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 ELMOD3Q96FG2 381 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 C1orf123Q9NWV4 160 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 TREM2Q9NZC2 230 aa12.04□□□□□ -0.48
C9orf3-202ENST00000297979 LEUTXA8MZ59 168 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 H7C1Q1 480 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 WNT9BO14905 357 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 DIRAS3O95661 229 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 ZNF728P0DKX0 622 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 FXYD4P59646 89 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 SLC9A3R2Q15599 337 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 ACP7Q6ZNF0 438 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 KCTD9Q7L273 389 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 MOB3AQ96BX8 217 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 SLA2Q9H6Q3 261 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 TAAR3PQ9P1P4 343 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 OR14J1Q9UGF5 321 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 PTBP3O95758 552 aaKnown RBP12.03□□□□□ -0.48
C9orf3-202ENST00000297979 SCTP09683 121 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 HERV-K104P61576 105 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 FLI1Q01543 452 aaPredicted RBP12.03□□□□□ -0.48
C9orf3-202ENST00000297979 ZNF880Q6PDB4 577 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 ETV3LQ6ZN32 361 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 C20orf204Q6ZNR8 217 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 EDARADDQ8WWZ3 215 aa12.03□□□□□ -0.48
C9orf3-202ENST00000297979 A0A0B4J2A0 478 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 DPRXA6NFQ7 191 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 CCSO14618 274 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 ABCD4O14678 606 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 NFYAP23511 347 aaPredicted RBP12.02□□□□□ -0.48
C9orf3-202ENST00000297979 ASCL1P50553 236 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 SMIM21Q3B7S5 101 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 COQ8AQ8NI60 647 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 MRPL24Q96A35 216 aaKnown RBP12.02□□□□□ -0.48
C9orf3-202ENST00000297979 SHPKQ9UHJ6 478 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 RPH3ALQ9UNE2 315 aa12.02□□□□□ -0.48
C9orf3-202ENST00000297979 MED6O75586 246 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 TK1P04183 234 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 CTXN2P0C2S0 81 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 AADACP22760 399 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 UCP3P55916 312 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 RAB4BP61018 213 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 SRSF4Q08170 494 aaKnown RBP12.02□□□□□ -0.49
C9orf3-202ENST00000297979 MOB1BQ7L9L4 216 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 OR5T2Q8NGG2 359 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 PLPPR1Q8TBJ4 325 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 LRRC29Q8WV35 223 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 OR2V2Q96R30 315 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 SSX3Q99909 188 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 PDCD10Q9BUL8 212 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 CADP27708 2225 aa12.02□□□□□ -0.49
C9orf3-202ENST00000297979 CCL21O00585 134 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 PPYP01298 95 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 CEBPDP49716 269 aaPredicted RBP12.01□□□□□ -0.49
C9orf3-202ENST00000297979 RAB13P51153 203 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 HLA-DRB3P79483 266 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 BSPH1Q075Z2 132 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 HERPUD1Q15011 391 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 ZNF497Q6ZNH5 498 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 MEGF10Q96KG7 1140 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 SHANK1Q9Y566 2161 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 CRYM-AS1A6NIL9 109 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 ATXN7O15265 892 aaPredicted RBP12.01□□□□□ -0.49
C9orf3-202ENST00000297979 SPRY3O43610 288 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 RAB4AP20338 218 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 LMO1P25800 156 aa12.01□□□□□ -0.49
C9orf3-202ENST00000297979 SEC61A1P61619 476 aaKnown RBP12.01□□□□□ -0.49
C9orf3-202ENST00000297979 ATXN7L3Q14CW9 347 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms