RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CNEP1R1Q8N9A8 125 aa15.6■□□□□ 0.09
SHKBP1-201ENST00000291842 GMPPAQ96IJ6 420 aaPredicted RBP15.6■□□□□ 0.09
SHKBP1-201ENST00000291842 GINS3Q9BRX5 216 aa15.6■□□□□ 0.09
SHKBP1-201ENST00000291842 J3QT63 122 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 CDIPTO14735 213 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 PRH1P02810 166 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 SPP1P10451 314 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 Q6P435 159 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 PKIBQ9C010 78 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 CDH20Q9HBT6 801 aa15.59■□□□□ 0.09
SHKBP1-201ENST00000291842 H0YL77 283 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 TSPAN15O95858 294 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 CD5P06127 495 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 CTXN2P0C2S0 81 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 DANCRP0C864 163 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 CAMLGP49069 296 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 IZUMO4Q1ZYL8 232 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 AKIRIN2Q53H80 203 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 FAM76BQ5HYJ3 339 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 ZNF324BQ6AW86 544 aaPredicted RBP15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 LINC00596Q86U02 117 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 SLC25A40Q8TBP6 338 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 AKR1E2Q96JD6 320 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 RTL8AQ9BWD3 113 aa15.58■□□□□ 0.09
SHKBP1-201ENST00000291842 LAMA5O15230 3695 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 AGFG2O95081 481 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 SNAPINO95295 136 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 GRPP07492 148 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 SEC11BP0C7V7 166 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 WT1P19544 449 aaPredicted RBP15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 EPHA1P21709 976 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 HLA-DRB3P79483 266 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 PLPPR1Q8TBJ4 325 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 RIMS4Q9H426 269 aaPredicted RBP15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 C11orf1Q9H5F2 150 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 OR2W1Q9Y3N9 320 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 KIAA2026Q5HYC2 2103 aa15.58■□□□□ 0.08
SHKBP1-201ENST00000291842 CST7O76096 145 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 OR2H2O95918 312 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 UCP1P25874 307 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 NMSQ5H8A3 153 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 TMEM182Q6ZP80 229 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 SPAG16Q8N0X2 631 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 ZNF175Q9Y473 711 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 A0A0G2JRQ6 117 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 TMEM50AO95807 157 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 CEBPDP49716 269 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 PPT1P50897 306 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 ZNF154Q13106 437 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 CXorf67Q86X51 503 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 TMEM217Q8N7C4 229 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 OR1J1Q8NGS3 322 aa15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 CNOT1A5YKK6 2376 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-201ENST00000291842 GTF3C1Q12789 2109 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 PSG2P11465 335 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 VDAC1P21796 283 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 DVL1P1P54792 670 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 VAMP2P63027 116 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 TGFBR3Q03167 851 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 H1FOOQ8IZA3 346 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 LYPD6BQ8NI32 183 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 TMEM171Q8WVE6 324 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 GTF3AQ92664 365 aaKnown RBP15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 SPIN2AQ99865 258 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 SPIN2BQ9BPZ2 258 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 CLCF1Q9UBD9 225 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 CACFD1Q9UGQ2 172 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 TRAPPC2LQ9UL33 140 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 PROB1E7EW31 1015 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 NXPH2O95156 264 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 FTH1P19P0C7X4 201 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 PVALBP20472 110 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 F2RP25116 425 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 PSG7Q13046 419 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 MRPL49Q13405 166 aaKnown RBP15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 FAM122CQ6P4D5 195 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 ZNF880Q6PDB4 577 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 ETV3LQ6ZN32 361 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 PARD6AQ9NPB6 346 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 C19orf12Q9NSK7 152 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 LUZP4Q9P127 313 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 OR14J1Q9UGF5 321 aa15.56■□□□□ 0.08
SHKBP1-201ENST00000291842 SVILO95425 2214 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 TRBV6-6A0A0A6YYG2 114 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 LRP5LA4QPB2 252 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 FAM157AC9JC47 383 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 H0Y980 276 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 CHST1O43916 411 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 CTRB1P17538 263 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 MPV17P39210 176 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 CTRB2Q6GPI1 263 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 VWA1Q6PCB0 445 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 TMEM252Q8N6L7 170 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 GLRX2Q9NS18 164 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 TINAGQ9UJW2 476 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 PPP1R3CQ9UQK1 317 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 NBEAQ8NFP9 2946 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 OTOGLQ3ZCN5 2332 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 CDRT15L2A8MXV6 281 aa15.55■□□□□ 0.08
SHKBP1-201ENST00000291842 HSPA12AO43301 675 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms