RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ERP29P30040 261 aaKnown RBP13.83□□□□□ -0.2
USP4-201ENST00000265560 ABCA11PQ4W5N1 156 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 NCMAPQ5T1S8 102 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 ZNF497Q6ZNH5 498 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 TAF9BQ9HBM6 251 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 WIPI2Q9Y4P8 454 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 NPTNQ9Y639 398 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 HSPA12AO43301 675 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 RPS2P15880 293 aaKnown RBP13.83□□□□□ -0.2
USP4-201ENST00000265560 AP2S1P53680 142 aaPredicted RBP13.83□□□□□ -0.2
USP4-201ENST00000265560 PIK3IP1Q96FE7 263 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 SHARPINQ9H0F6 387 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 RAI1Q7Z5J4 1906 aaPredicted RBP13.83□□□□□ -0.2
USP4-201ENST00000265560 IGHV3-43A0A0B4J1X8 118 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 SRRM5B3KS81 715 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 IGHV3-43DP0DP04 118 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 OR3A1P47881 315 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 ZBTB8BQ8NAP8 495 aaPredicted RBP13.82□□□□□ -0.2
USP4-201ENST00000265560 TMEM185AQ8NFB2 350 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 OR1L1Q8NH94 360 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 CCL17Q92583 94 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 HYLS1Q96M11 299 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 NGBQ9NPG2 151 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 FXYD6-FXYD2A0A087WZ82 144 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 A0A1B0GWJ7 208 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 CEACAM18A8MTB9 384 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 DUS4LO95620 317 aaKnown RBP13.82□□□□□ -0.2
USP4-201ENST00000265560 CD3EP07766 207 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 SSTR5P35346 364 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 RTN4IP1Q8WWV3 396 aaPredicted RBP13.82□□□□□ -0.2
USP4-201ENST00000265560 CCL28Q9NRJ3 127 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 SLC2A9Q9NRM0 540 aa13.82□□□□□ -0.2
USP4-201ENST00000265560 CISD1Q9NZ45 108 aaKnown RBP13.82□□□□□ -0.2
USP4-201ENST00000265560 PRSS44E7EML9 344 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 M0R233 179 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 OR2A4O95047 310 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 SFT2D2O95562 160 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 KRBOX4Q5JUW0 171 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 C9orf62Q8N4C0 152 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 OR2A7Q96R45 310 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 HCFC1P51610 2035 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 C17orf100A8MU93 164 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 DEFB108AA8MXU0 73 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 LYNX1G3V0Z9 82 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 GYPAP02724 150 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 LYNX1P0DP58 116 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 PPP3CBP16298 524 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 OMGP23515 440 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 EDDM3BP56851 147 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 LGALSLQ3ZCW2 172 aaPredicted RBP13.81□□□□□ -0.2
USP4-201ENST00000265560 ZNF818PQ6ZRF7 136 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 CLEC4MQ9H2X3 399 aaPredicted RBP13.81□□□□□ -0.2
USP4-201ENST00000265560 MYOZ1Q9NP98 299 aaPredicted RBP13.81□□□□□ -0.2
USP4-201ENST00000265560 RASL12Q9NYN1 266 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 RNF150Q9ULK6 438 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 DOCK11Q5JSL3 2073 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 KIR2DS1A0A191URI9 304 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 ARPC5O15511 151 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 GIPP09681 153 aaPredicted RBP13.81□□□□□ -0.2
USP4-201ENST00000265560 OR5AC1P0C628 307 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 GNRHRP30968 328 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 KIR2DS4P43632 304 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 HLA-DRB3P79483 266 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 KIR2DS1Q14954 304 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 FAM90A1Q86YD7 464 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 OR10J5Q8NHC4 309 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 MOB3AQ96BX8 217 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 SCGB3A2Q96PL1 93 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 METTL8Q9H825 291 aaKnown RBP13.81□□□□□ -0.2
USP4-201ENST00000265560 DYNLRB1Q9NP97 96 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 RDH8Q9NYR8 311 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 GSKIPQ9P0R6 139 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 GLS2Q9UI32 602 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 MAB21L2Q9Y586 359 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 CSMD2Q7Z408 3487 aa13.81□□□□□ -0.2
USP4-201ENST00000265560 TAS2R31P59538 309 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 MEX3BQ6ZN04 569 aaKnown RBP13.8□□□□□ -0.2
USP4-201ENST00000265560 FOXRED2Q8IWF2 684 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 GAPTQ8N292 157 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 OR13A1Q8NGR1 328 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 CCL13Q99616 98 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 VRK1Q99986 396 aaPredicted RBP13.8□□□□□ -0.2
USP4-201ENST00000265560 SLC5A7Q9GZV3 580 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 RANBP3Q9H6Z4 567 aaPredicted RBP13.8□□□□□ -0.2
USP4-201ENST00000265560 IFT22Q9H7X7 185 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 IL19Q9UHD0 177 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 DHODHQ02127 395 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 OR5M8Q8NGP6 311 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 ZFAND1Q8TCF1 268 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 DECR2Q9NUI1 292 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 RNF7Q9UBF6 113 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 RBM7Q9Y580 266 aaKnown RBP13.8□□□□□ -0.2
USP4-201ENST00000265560 DOPEY1Q5JWR5 2465 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 WNK2Q9Y3S1 2297 aa13.8□□□□□ -0.2
USP4-201ENST00000265560 LY6HO94772 140 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 CTSDP07339 412 aaPredicted RBP13.79□□□□□ -0.2
USP4-201ENST00000265560 RAP2BP61225 183 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 MZT1Q08AG7 82 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 GNMTQ14749 295 aa13.79□□□□□ -0.2
USP4-201ENST00000265560 SGPP2Q8IWX5 399 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms