RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 THNSL2Q86YJ6 484 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 GINS3Q9BRX5 216 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 TTTY12Q9BZ98 90 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 COA4Q9NYJ1 87 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 BOKQ9UMX3 212 aaPredicted RBP18.21■□□□□ 0.5
TRIM28-201ENST00000253024 TMED3Q9Y3Q3 217 aa18.21■□□□□ 0.5
TRIM28-201ENST00000253024 SYNGR4O95473 234 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 SERPINA7P05543 415 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 PTAFRP25105 342 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 PMP22Q01453 160 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 APH1AQ96BI3 265 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 REPIN1Q9BWE0 567 aaKnown RBP18.2■□□□□ 0.5
TRIM28-201ENST00000253024 SCRT1Q9BWW7 348 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 ATMQ13315 3056 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 PQLC2LA1A4F0 135 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 MEOX2P50222 304 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 PDZD11Q5EBL8 140 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 ASCL4Q6XD76 172 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 TMEM251Q8N6I4 163 aa18.2■□□□□ 0.5
TRIM28-201ENST00000253024 WISP2O76076 250 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 HOXA1P49639 335 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-201ENST00000253024 Q6ZSR3 168 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 ZNF703Q9H7S9 590 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-201ENST00000253024 FZR1Q9UM11 496 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 ZFP92A6NM28 416 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 METTL15P1P0C7V9 234 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 RPS10P46783 165 aaKnown RBP18.19■□□□□ 0.5
TRIM28-201ENST00000253024 CLDN18P56856 261 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 IL13RA2Q14627 380 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 LCN15Q6UWW0 184 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 Q6ZRM9 215 aa18.19■□□□□ 0.5
TRIM28-201ENST00000253024 SLC34A2O95436 690 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 GRPP07492 148 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 ODF3L1Q8IXM7 274 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 RIF1Q5UIP0 2472 aaKnown RBP18.18■□□□□ 0.5
TRIM28-201ENST00000253024 TUSC2O75896 110 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 MDKP21741 143 aaPredicted RBP18.18■□□□□ 0.5
TRIM28-201ENST00000253024 WNT5AP41221 380 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 SSPNQ14714 243 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 DHRS13Q6UX07 377 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 C1orf210Q8IVY1 113 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 CYB561D1Q8N8Q1 229 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 VSIRQ9H7M9 311 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 CHD3Q12873 2000 aaKnown RBP18.18■□□□□ 0.5
TRIM28-201ENST00000253024 SERPINE2P07093 398 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 LINC00205P59089 165 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 FGF12P61328 243 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 RND3P61587 244 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 SPINK9Q5DT21 86 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 GPR157Q5UAW9 335 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 IL22RA1Q8N6P7 574 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 SLC35B3Q9H1N7 401 aa18.18■□□□□ 0.5
TRIM28-201ENST00000253024 RIPPLY2Q5TAB7 128 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 PCNX2A6NKB5 2137 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 PGLYRP1O75594 196 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-201ENST00000253024 MT-CO3P00414 261 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 PLP2Q04941 152 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 MPV17LQ2QL34 196 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 CEACAM21Q3KPI0 293 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 TPRX1Q8N7U7 411 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 FAM86C1Q9NVL1 165 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 GNG13Q9P2W3 67 aa18.17■□□□□ 0.5
TRIM28-201ENST00000253024 TRAV24A0A0B4J272 114 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 K7N7A8 449 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 IDH3GP51553 393 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-201ENST00000253024 ELLP55199 621 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-201ENST00000253024 CMTM1Q8IZ96 169 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 OR10J5Q8NHC4 309 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 OR2C1O95371 312 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 TRA2AQ13595 282 aaKnown RBP eCLIP18.16■□□□□ 0.5
TRIM28-201ENST00000253024 LTC4SQ16873 150 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 WDR5BQ86VZ2 330 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 ZNF808Q8N4W9 903 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-201ENST00000253024 NIT2Q9NQR4 276 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 CACNG5Q9UF02 275 aa18.16■□□□□ 0.5
TRIM28-201ENST00000253024 CDIPTO14735 213 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 YIF1AO95070 293 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 IGHV3-13P01766 116 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 IGHV3-7P01780 117 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 GPR146Q96CH1 333 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 PRDM14Q9GZV8 571 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 PLEKHF2Q9H8W4 249 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 TAAR3PQ9P1P4 343 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 ANKRD30BLA7E2S9 258 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 RAB5AP20339 215 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 AKR1C8PQ5T2L2 129 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 RBFOX3A6NFN3 312 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 LYZL6O75951 148 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 DEFA4P12838 97 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 CLEC12BQ2HXU8 276 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 MDP1Q86V88 176 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 LRTM2Q8N967 370 aa18.15■□□□□ 0.5
TRIM28-201ENST00000253024 MRPL30Q8TCC3 161 aaKnown RBP18.15■□□□□ 0.5
TRIM28-201ENST00000253024 APOBEC3DQ96AK3 386 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-201ENST00000253024 NAPSAO96009 420 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 TAGLN2P37802 199 aaKnown RBP18.14■□□□□ 0.49
TRIM28-201ENST00000253024 KRTAP27-1Q3LI81 207 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 OR8G2PQ6IF36 304 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 ZNF826PQ6ZT77 177 aa18.14■□□□□ 0.49
TRIM28-201ENST00000253024 FAM173AQ9BQD7 235 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms