RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PSMB2P49721 201 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 OR2B11Q5JQS5 317 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 LCN10Q6JVE6 187 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 FA2HQ7L5A8 372 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CALHM3Q86XJ0 350 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 RPUSD4Q96CM3 377 aaKnown RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 LINC00052Q96N35 136 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 BCL2L10Q9HD36 194 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 TRAV6A0A075B6T7 132 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 A0A0J9YW62 118 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SMIM30A4D0T7 59 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DBX1A6NMT0 343 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CD80P33681 288 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ETV4P43268 484 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CD69Q07108 199 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 Q0VFX4 171 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CMPK2Q5EBM0 449 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 FAM209BQ5JX69 171 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CYHR1Q6ZMK1 362 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SLC35E3Q7Z769 313 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SLC35B4Q969S0 331 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SEC22AQ96IW7 307 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 UCN2Q96RP3 112 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CTDSP1Q9GZU7 261 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 UBQLN3Q9H347 655 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PRSS50Q9UI38 385 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 R4GMQ9 66 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 V9GYS6 101 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ZNF236Q9UL36 1845 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ADAMTS9Q9P2N4 1935 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 A6NNC1 897 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PHF1O43189 567 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 SYNGR2O43760 224 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 C1QL1O75973 258 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 GLI4P10075 376 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 HSD17B1P14061 328 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 TPPP2P59282 170 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 GLYATL3Q5SZD4 288 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 UQCC3Q6UW78 93 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 UNQ5815/PRO19632Q6UWF5 114 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 LIMS2Q7Z4I7 341 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 OR1L6Q8NGR2 347 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CRIM1Q9NZV1 1036 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ING1Q9UK53 422 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 LOC107986453A0A1B0GWG9 222 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ACOD1A6NK06 481 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 G3V2L1 256 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CDIPTO14735 213 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 FOXS1O43638 330 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 KLF7O75840 302 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DNAL4O96015 105 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 FGF2P09038 288 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 HTN3P15516 51 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ATXN7L3Q14CW9 347 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 Q499Y3 187 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 OR4A47Q6IF82 309 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 LIAT1Q6ZQX7 453 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PIP4P1Q86T03 277 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 CCDC190Q86UF4 302 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PLPP7Q8NBV4 271 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DUSP18Q8NEJ0 188 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 OR10V1Q8NGI7 309 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 BCL2L2Q92843 193 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 ACY3Q96HD9 319 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DMRTB1Q96MA1 342 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 DOK1Q99704 481 aa4.39□□□□□ -1.71
SCN1A-218ENST00000640036 PURGQ9UJV8 347 aaKnown RBP4.39□□□□□ -1.71
SCN1A-218ENST00000640036 HMGN4O00479 90 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 COX7A2P2O60397 106 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 FCMRO60667 390 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ADAP1O75689 374 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CALCBP10092 127 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ADRA2CP18825 462 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 FUT3P21217 361 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 RPS10P46783 165 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 UBE2MP61081 183 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MRPS34P82930 218 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ZP4Q12836 540 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 Q3ZCU0 254 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 LILRB1Q8NHL6 650 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TMEM165Q9HC07 324 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 AP5S1Q9NUS5 200 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 B9D1Q9UPM9 204 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 RALGAPA2Q2PPJ7 1873 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 THY1P04216 161 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 PATE4P0C8F1 98 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ATF1P18846 271 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ACKR3P25106 362 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 COX20Q5RI15 118 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 NKAIN4Q8IVV8 208 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 OR8I2Q8N0Y5 310 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 ARHGEF39Q8N4T4 335 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 SLC38A9Q8NBW4 561 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 OR4S2Q8NH73 311 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 FAM110DQ8TAY7 271 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 MRPL13Q9BYD1 178 aaKnown RBP4.38□□□□□ -1.71
SCN1A-218ENST00000640036 CHST6Q9GZX3 395 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 FAM206AQ9NX38 181 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 J3QW42 95 aa4.38□□□□□ -1.71
SCN1A-218ENST00000640036 TOXO94900 526 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms