RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 EFNB1P98172 346 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 FOXE3Q13461 319 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 CDK5R1Q15078 307 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 TGIF2LXQ8IUE1 241 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 SBSPONQ8IVN8 264 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 OR11H1Q8NG94 326 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 OR51T1Q8NGJ9 327 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 OR5B12Q96R08 314 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 RASL11BQ9BPW5 248 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 BARHL1Q9BZE3 327 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 FAM192AQ9GZU8 254 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 ABCG5Q9H222 651 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 RIBC2Q9H4K1 309 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 LIN7CQ9NUP9 197 aaKnown RBP11.75□□□□□ -0.53
SYNE2-228ENST00000639659 FRRS1LQ9P0K9 344 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 MYRFQ9Y2G1 1151 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 G3V2T6 193 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 MPZL2O60487 215 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 GAPDHP04406 335 aaKnown RBP11.74□□□□□ -0.53
SYNE2-228ENST00000639659 ELANEP08246 267 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 CGB3P0DN86 165 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 CGB7P0DN87 165 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 NANOS3P60323 173 aaKnown RBP11.74□□□□□ -0.53
SYNE2-228ENST00000639659 SAXO1Q8IYX7 474 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 Q8N9W7 124 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 OR10K1Q8NGX5 313 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 OR2T10Q8NGZ9 312 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 PLPPR1Q8TBJ4 325 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 C4orf3Q8WVX3 66 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 MBOAT4Q96T53 435 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 HSPB9Q9BQS6 159 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 ZCCHC4Q9H5U6 513 aa11.74□□□□□ -0.53
SYNE2-228ENST00000639659 SIRT4Q9Y6E7 314 aaPredicted RBP11.74□□□□□ -0.53
SYNE2-228ENST00000639659 DYNC2H1Q8NCM8 4307 aaKnown RBP11.74□□□□□ -0.53
SYNE2-228ENST00000639659 IGHV3-43A0A0B4J1X8 118 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 TRAV24A0A0B4J272 114 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 TCRBV3S1A0A5B6 114 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 DAPL1A0PJW8 107 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 IGHV3-43DP0DP04 118 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 DBTP11182 482 aaKnown RBP11.73□□□□□ -0.53
SYNE2-228ENST00000639659 MYF6P23409 242 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 MTNR1BP49286 362 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF816Q0VGE8 651 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-228ENST00000639659 DOC2BQ14184 412 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 PIGYQ3MUY2 71 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 SATL1Q86VE3 508 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 CCDC197Q8NCU1 140 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 CNIH3Q8TBE1 160 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 RNF166Q96A37 237 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-228ENST00000639659 GPER1Q99527 375 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 RHOFQ9HBH0 211 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 ISYNA1Q9NPH2 558 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 FAM118AQ9NWS6 357 aa11.73□□□□□ -0.53
SYNE2-228ENST00000639659 J3QLW9 94 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 GYG2O15488 501 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 SLC2A2P11168 524 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF19P17023 458 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 POLR2IP36954 125 aaKnown RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 ZP1P60852 638 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 ISL1P61371 349 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 KISS1Q15726 138 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 FAM27D1Q5T7N8 215 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF691Q5VV52 312 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 RSBN1Q5VWQ0 802 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 FAM53AQ6NSI3 398 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 IZUMO1Q8IYV9 350 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 TNFAIP8L1Q8WVP5 186 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 TSEN15Q8WW01 171 aaKnown RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 RFKQ969G6 155 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 EME1Q96AY2 570 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 RNFT2Q96EX2 444 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 KCTD7Q96MP8 289 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 S1PR3Q99500 378 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 CIB1Q99828 191 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 ENOPH1Q9UHY7 261 aa11.72□□□□□ -0.53
SYNE2-228ENST00000639659 EPPK1P58107 5090 aaKnown RBP11.72□□□□□ -0.53
SYNE2-228ENST00000639659 BIRC6Q9NR09 4857 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 SACSQ9NZJ4 4579 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 LCE6AA0A183 80 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF736B4DX44 427 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-228ENST00000639659 NPIPB11E5RHQ5 1161 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 SDCBPO00560 298 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-228ENST00000639659 SULT1B1O43704 296 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 SAP30O75446 220 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 HTR3BO95264 441 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 MOSP00540 346 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 MT-ND2P03891 347 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 ISG15P05161 165 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 IL3RAP26951 378 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 SOX6P35712 828 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 GABPB1Q06547 395 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-228ENST00000639659 KDM4DQ6B0I6 523 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 TMEM65Q6PI78 240 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 ZDHHC13Q8IUH4 622 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 OR1N2Q8NGR9 330 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 CCDC107Q8WV48 283 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 ZMAT4Q9H898 229 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 GNB4Q9HAV0 340 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF581Q9P0T4 197 aa11.71□□□□□ -0.53
SYNE2-228ENST00000639659 POMPQ9Y244 141 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms