RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 RAB3CQ96E17 227 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 NKX3-1Q99801 234 aaPredicted RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 BANF2Q9H503 90 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 AUNIPQ9H7T9 357 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 RBFOX1Q9NWB1 397 aaKnown RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 SLC25A10Q9UBX3 287 aaPredicted RBP8.15□□□□□ -1.1
CLN3-261ENST00000637686 OR14J1Q9UGF5 321 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 MAB21L2Q9Y586 359 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 NAV3Q8IVL0 2385 aa8.15□□□□□ -1.1
CLN3-261ENST00000637686 MFNGO00587 321 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 SH2D1BO14796 132 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 ECDO95905 644 aaPredicted RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 LIPFP07098 398 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 NDUFB7P17568 137 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 PRKACAP17612 351 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 EPHA1P21709 976 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 VEGFCP49767 419 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 TMEM50BP56557 158 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 PLA2G7Q13093 441 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 RBM39Q14498 530 aaKnown RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 TAF9Q16594 264 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 KRTAP21-3Q3LHN1 58 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 ZNF260Q3ZCT1 412 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 Q6ZTK2 550 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 ZNF561Q8N587 486 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 TMEM185AQ8NFB2 350 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 H1FXQ92522 213 aaKnown RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 SDSLQ96GA7 329 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 ABHD1Q96SE0 405 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 RIMS4Q9H426 269 aaPredicted RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 KCNK15Q9H427 330 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 RPUSD1Q9UJJ7 312 aaKnown RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 RBMX2Q9Y388 322 aaKnown RBP8.14□□□□□ -1.11
CLN3-261ENST00000637686 DSCAML1Q8TD84 2053 aa8.14□□□□□ -1.11
CLN3-261ENST00000637686 TRAV18A0A075B6X5 111 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 IGHV3OR16-10A0A075B7F0 116 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 GEMIN2O14893 280 aaKnown RBP8.13□□□□□ -1.11
CLN3-261ENST00000637686 GPR37O15354 613 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 SOCS1O15524 211 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 FSHBP01225 129 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 CSN2P05814 226 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PPIAL4GP0DN37 164 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 BLVRBP30043 206 aaPredicted RBP8.13□□□□□ -1.11
CLN3-261ENST00000637686 PRSS3P35030 304 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 CBX5P45973 191 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 ARF6P62330 175 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 COL10A1Q03692 680 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 DCTN2Q13561 401 aaKnown RBP8.13□□□□□ -1.11
CLN3-261ENST00000637686 SRSF7Q16629 238 aaKnown RBP eCLIP8.13□□□□□ -1.11
CLN3-261ENST00000637686 C11orf91Q3C1V1 193 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PIGYQ3MUY2 71 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 MOGAT2Q3SYC2 334 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 KLF17Q5JT82 389 aaPredicted RBP8.13□□□□□ -1.11
CLN3-261ENST00000637686 SIGIRRQ6IA17 410 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 Q6P435 159 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 Q8N402 240 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 LY6G5BQ8NDX9 201 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PPP1R35Q8TAP8 253 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 GPX8Q8TED1 209 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 C22orf15Q8WYQ4 148 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 UPRTQ96BW1 309 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 NEDD4LQ96PU5 975 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 SDHCQ99643 169 aaPredicted RBP8.13□□□□□ -1.11
CLN3-261ENST00000637686 NICN1Q9BSH3 213 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PCGF1Q9BSM1 259 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 DCTN5Q9BTE1 182 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PECRQ9BY49 303 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 CHST6Q9GZX3 395 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 NCOR1P1Q9H4R4 102 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 OCEL1Q9H607 264 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 PLEKHJ1Q9NW61 149 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 TAS2R8Q9NYW2 309 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 IL36RNQ9UBH0 155 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 NUP50Q9UKX7 468 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 ANAPC10Q9UM13 185 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 JMJD1CQ15652 2540 aa8.13□□□□□ -1.11
CLN3-261ENST00000637686 TRBV6-6A0A0A6YYG2 114 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 UPK1BO75841 260 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 OR7C1O76099 320 aaPredicted RBP8.12□□□□□ -1.11
CLN3-261ENST00000637686 TOX4O94842 621 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 HAND1O96004 215 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 LPLP06858 475 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 IGHV4-38-2P0DP08 117 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 MMP9P14780 707 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 DTYMKP23919 212 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 GABRR1P24046 479 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 SNU13P55769 128 aaKnown RBP8.12□□□□□ -1.11
CLN3-261ENST00000637686 ACTBP60709 375 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 ACTG1P63261 375 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 SRSF2Q01130 221 aaKnown RBP8.12□□□□□ -1.11
CLN3-261ENST00000637686 CDNFQ49AH0 187 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 PYDC2Q56P42 97 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 PLAC9Q5JTB6 97 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 METTL11BQ5VVY1 283 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 Q6ZS49 121 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 GAPTQ8N292 157 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 SETD6Q8TBK2 473 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 FCAMRQ8WWV6 532 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 TRIM63Q969Q1 353 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 ARHGAP5-AS1Q96IT6 56 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms