RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 HEATR1Q9H583 2144 aaKnown RBP11.91□□□□□ -0.5
VPS33B-208ENST00000574755 IGKV1D-13A0A0B4J2D9 117 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 A0A1B0GW55 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DEDDO75618 318 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L2P0CJ85 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L3P0CJ86 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L4P0CJ87 422 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L5P0CJ88 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L6P0CJ89 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4L7P0CJ90 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 IGKV1-13P0DP09 117 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 MDH2P40926 338 aaKnown RBP11.91□□□□□ -0.5
VPS33B-208ENST00000574755 KCNJ3P48549 501 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 HLA-DRB3P79483 266 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 TBC1D26Q86UD7 250 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 GAPTQ8N292 157 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 OR4A4PQ8NGN8 299 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 OR10J5Q8NHC4 309 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 SHARPINQ9H0F6 387 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 DUX4Q9UBX2 424 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 PCDHB10Q9UN67 800 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 PTPRZ1P23471 2315 aaPredicted RBP11.91□□□□□ -0.5
VPS33B-208ENST00000574755 IGHV2OR16-5A0A0B4J2B6 119 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 GPR31O00270 319 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 SLC33A1O00400 549 aaPredicted RBP11.91□□□□□ -0.5
VPS33B-208ENST00000574755 TUSC2O75896 110 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 TUBG1P23258 451 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 GCH1P30793 250 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 ZNF146Q15072 292 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 ZNF718Q3SXZ3 478 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 ALKBH2Q6NS38 261 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 PCSK4Q6UW60 755 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 BAP18Q8IXM2 172 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 SLC35G3Q8N808 338 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 LHFPL5Q8TAF8 219 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 IL1F10Q8WWZ1 152 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 TUBG2Q9NRH3 451 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 CYTL1Q9NRR1 136 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 AMDHD2Q9Y303 409 aa11.91□□□□□ -0.5
VPS33B-208ENST00000574755 MKRN2OSH3BPM6 223 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 H7C1Q1 480 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 K7EPK0 472 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 HSD17B6O14756 317 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 SH2D1BO14796 132 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 NAAAQ02083 359 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 C1orf185Q5T7R7 199 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 TMEM268Q5VZI3 342 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 ZNF880Q6PDB4 577 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 FAM71E2Q8N5Q1 922 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 GALNT11Q8NCW6 608 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 KIRREL1Q96J84 757 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 TREM2Q9NZC2 230 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 OR14J1Q9UGF5 321 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 UBE2J1Q9Y385 318 aaPredicted RBP11.9□□□□□ -0.5
VPS33B-208ENST00000574755 ATMQ13315 3056 aa11.9□□□□□ -0.5
VPS33B-208ENST00000574755 A6NLC8 198 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 HKR1P10072 659 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 SRPXP78539 464 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 FIP1L1Q6UN15 594 aaKnown RBP11.9□□□□□ -0.51
VPS33B-208ENST00000574755 LDLRAD3Q86YD5 345 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 PRR18Q8N4B5 295 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 PLPPR1Q8TBJ4 325 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 GPHA2Q96T91 129 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 TMEM222Q9H0R3 208 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 CXXC4Q9H2H0 198 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 MSL2Q9HCI7 577 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 OR2S2Q9NQN1 319 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 CCL28Q9NRJ3 127 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 TRAPPC2LQ9UL33 140 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 TMED3Q9Y3Q3 217 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 SLC25A15Q9Y619 301 aa11.9□□□□□ -0.51
VPS33B-208ENST00000574755 ANKRD11Q6UB99 2663 aaPredicted RBP11.89□□□□□ -0.51
VPS33B-208ENST00000574755 TRAV39A0A0B4J263 110 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 MBPP02686 304 aaPredicted RBP11.89□□□□□ -0.51
VPS33B-208ENST00000574755 KITLGP21583 273 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 RPL12P30050 165 aaKnown RBP11.89□□□□□ -0.51
VPS33B-208ENST00000574755 RND3P61587 244 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 EIF2S3LQ2VIR3 472 aaKnown RBP11.89□□□□□ -0.51
VPS33B-208ENST00000574755 ZNF497Q6ZNH5 498 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 ZNF826PQ6ZT77 177 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 CMTM1Q8IZ96 169 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 LRRC20Q8TCA0 184 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 SHOXO15266 292 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 FOXC1Q12948 553 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 ZNF474Q6S9Z5 364 aaPredicted RBP11.89□□□□□ -0.51
VPS33B-208ENST00000574755 FAM180AQ6UWF9 173 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 MOB1BQ7L9L4 216 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 ZNF695Q8IW36 515 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 OR52M1Q8NGK5 317 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 OR2W1Q9Y3N9 320 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 SPTBN2O15020 2390 aa11.89□□□□□ -0.51
VPS33B-208ENST00000574755 DMXL2Q8TDJ6 3036 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 HAND1O96004 215 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 TIMP3P35625 211 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 CEBPDP49716 269 aaPredicted RBP11.88□□□□□ -0.51
VPS33B-208ENST00000574755 ZNF83P51522 516 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 KRTCAP3Q53RY4 240 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 PRAMEF6Q5VXH4 476 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 SHEQ5VZ18 495 aa11.88□□□□□ -0.51
VPS33B-208ENST00000574755 MBNL2Q5VZF2 373 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms