RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SCP2D1Q9UJQ7 156 aa11.42□□□□□ -0.58
CCDC40-209ENST00000573474 TRAPPC2LQ9UL33 140 aa11.42□□□□□ -0.58
CCDC40-209ENST00000573474 NUBP2Q9Y5Y2 271 aa11.42□□□□□ -0.58
CCDC40-209ENST00000573474 FUOMA2VDF0 154 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TCRBP04435 133 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 GSTT2P0CG29 244 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TMEM33P57088 247 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 AESQ08117 197 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 BTN2A1Q7KYR7 527 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 OVCH2Q7RTZ1 564 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 SLC36A1Q7Z2H8 476 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 GLCCI1Q86VQ1 547 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TMEM17Q86X19 198 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 ARRDC1Q8N5I2 433 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 CCDC107Q8WV48 283 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 C14orf79Q96F83 325 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TIMD4Q96H15 378 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 COQ2Q96H96 371 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 CCL19Q99731 98 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TMEM246Q9BRR3 403 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 MMP28Q9H239 520 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 NCOR1P1Q9H4R4 102 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 CHODLQ9H9P2 273 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 NECAP2Q9NVZ3 263 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 SLC2A8Q9NY64 477 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 EHFQ9NZC4 300 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 KIF25Q9UIL4 384 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 TANC2Q9HCD6 1990 aa11.41□□□□□ -0.58
CCDC40-209ENST00000573474 MEIKINA0A087WXM9 373 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 TMPRSS2O15393 492 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 FABP7O15540 132 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 LY6HO94772 140 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 NDUFB6O95139 128 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 IGHV2-70P01814 119 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 CTXN2P0C2S0 81 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 RCC1P18754 421 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-209ENST00000573474 ERP29P30040 261 aaKnown RBP11.4□□□□□ -0.58
CCDC40-209ENST00000573474 GLIPR1P48060 266 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 TSPAN5P62079 268 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 SCGB2B2Q4G0G5 96 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 IDO2Q6ZQW0 420 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 MUC20Q8N307 709 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-209ENST00000573474 FAM216BQ8N7L0 139 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 TMEM185AQ8NFB2 350 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 RAB1CQ92928 201 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 CREB3L1Q96BA8 519 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 SLC25A21Q9BQT8 299 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-209ENST00000573474 MARVELD1Q9BSK0 173 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 MBNL3Q9NUK0 354 aaKnown RBP11.4□□□□□ -0.58
CCDC40-209ENST00000573474 KCNIP1Q9NZI2 227 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 KAAG1Q9UBP8 84 aa11.4□□□□□ -0.58
CCDC40-209ENST00000573474 COL12A1Q99715 3063 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 A0A1B0GVG6 124 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 A0A1B0GW55 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 SDCBPO00560 298 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-209ENST00000573474 PPIHO43447 177 aaKnown RBP11.39□□□□□ -0.59
CCDC40-209ENST00000573474 ADAM20O43506 726 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 SCTP09683 121 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L2P0CJ85 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L3P0CJ86 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L4P0CJ87 422 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L5P0CJ88 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L6P0CJ89 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L7P0CJ90 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 OR5H8P0DN80 308 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 SELLP14151 372 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 COL8A1P27658 744 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 P2RX3P56373 397 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 HLA-DRB3P79483 266 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 EDDM3AQ14507 147 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 RBMS2Q15434 407 aaKnown RBP11.39□□□□□ -0.59
CCDC40-209ENST00000573474 C6orf183Q5T699 404 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 TRAT1Q6PIZ9 186 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4L9Q6RFH8 374 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-209ENST00000573474 OR4A4PQ8NGN8 299 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 TERB2Q8NHR7 220 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 LURAP1Q96LR2 239 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 PSMG3-AS1Q96PY0 264 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 GINS4Q9BRT9 223 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 DUX4Q9UBX2 424 aa11.39□□□□□ -0.59
CCDC40-209ENST00000573474 TRAV39A0A0B4J263 110 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 ODAMA1E959 279 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 INMT-MINDY4F8WBC2 141 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 NDUFB3O43676 98 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 NDUFS7O75251 213 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 H2AFB2P0C5Z0 115 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 SSTR2P30874 369 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 GLP1RP43220 463 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 RAG2P55895 527 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 SEC61A1P61619 476 aaKnown RBP11.38□□□□□ -0.59
CCDC40-209ENST00000573474 HMGN3Q15651 99 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 LRRC10Q5BKY1 277 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 DHRS11Q6UWP2 260 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 LYPD2Q6UXB3 125 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 ZNF554Q86TJ5 538 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 OR6F1Q8NGZ6 308 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 UPRTQ96BW1 309 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 TAF9BQ9HBM6 251 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 NUDT15Q9NV35 164 aa11.38□□□□□ -0.59
CCDC40-209ENST00000573474 SLC25A10Q9UBX3 287 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms