RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PCP4L1A6NKN8 68 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 K7N7A8 449 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 NRASP01111 189 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 IL1AP01583 271 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 HLA-DQB1P01920 261 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MT-ND2P03891 347 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 CDK1P06493 297 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 CD28P10747 220 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 CCL1P22362 96 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 COX7A1P24310 79 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 RIDAP52758 137 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 CRISP1P54107 249 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 RAB4BP61018 213 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 RPS7P62081 194 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 POLR2GP62487 172 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS53-213ENST00000572334 PTGES3Q15185 160 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 SNAPC1Q16533 368 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 SMIM21Q3B7S5 101 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 OXLD1Q5BKU9 147 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ZNF684Q5T5D7 378 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 AADACL4Q5VUY2 407 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MEDAGQ5VYS4 303 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ZNF626Q68DY1 528 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 KCTD18Q6PI47 426 aaPredicted RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 C11orf88Q6PI97 169 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 FAM131AQ6UXB0 335 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ZNF600Q6ZNG1 722 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 OVCH2Q7RTZ1 564 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 TMEM219Q86XT9 240 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ZNF561Q8N587 486 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 EIF4E3Q8N5X7 224 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 OR4C13Q8NGP0 309 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 OR2T27Q8NH04 317 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 OR2T6Q8NHC8 308 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ASB13Q8WXK3 278 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 ACOT12Q8WYK0 555 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MBOAT4Q96T53 435 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 C7orf50Q9BRJ6 194 aaKnown RBP5.41□□□□□ -1.54
VPS53-213ENST00000572334 CENPOQ9BU64 300 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 CDCA4Q9BXL8 241 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 FAM234AQ9H0X4 552 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MMP28Q9H239 520 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 HEXA-AS1Q9H8Q6 139 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MTCH1Q9NZJ7 389 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 MLXQ9UH92 298 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 SLC22A13Q9Y226 551 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 TCF19Q9Y242 345 aa5.41□□□□□ -1.54
VPS53-213ENST00000572334 LOC100506127A0A0U1RQW1 187 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 ZAR1LA6NP61 321 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 TEX46H3BTG2 121 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 MITFO75030 526 aaPredicted RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 NXPH2O95156 264 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 HTR1AP08908 422 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 SMIM6P0DI80 62 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 IGHV1-8P0DP01 117 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 VSIG10L2P0DP72 767 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 SLC2A2P11168 524 aaPredicted RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 PIPP12273 146 aaPredicted RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 ANXA8P13928 327 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 SPNP16150 400 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 S100PP25815 95 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 TNFSF8P32971 234 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 CAPZA1P52907 286 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 BLCAPP62952 87 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 COL10A1Q03692 680 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 IL24Q13007 206 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 UBE2V2Q15819 145 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 TATDN3Q17R31 274 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 NSUN5P1Q3KNT7 163 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 TMEM95Q3KNT9 176 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 Q3ZCU0 254 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 PLA1AQ53H76 456 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 C12orf73Q69YU5 71 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 ZNF322Q6U7Q0 402 aaPredicted RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 BAIAP2L2Q6UXY1 529 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 LIAT1Q6ZQX7 453 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 MEPCEQ7L2J0 689 aaKnown RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 TMEM17Q86X19 198 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 ZNF573Q86YE8 665 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 SLC35F2Q8IXU6 374 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 STPG2Q8N412 459 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 OR11H6Q8NGC7 330 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 OR52N4Q8NGI2 321 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 OR4D10Q8NGI6 311 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 ASB17Q8WXJ9 295 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 PHF21AQ96BD5 680 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 CNN2Q99439 309 aaKnown RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 CITED2Q99967 270 aaPredicted RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 OCSTAMPQ9BR26 566 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 MARVELD1Q9BSK0 173 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 SRRQ9GZT4 340 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 RIBC2Q9H4K1 309 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 RAB18Q9NP72 206 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 CLN6Q9NWW5 311 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 IMPAD1Q9NX62 359 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 IL36RNQ9UBH0 155 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 AASSQ9UDR5 926 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 OR14J1Q9UGF5 321 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 PSORS1C1Q9UIG5 152 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 OR52A1Q9UKL2 312 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms