RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DUXBA0A1W2PPF3 345 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 MED19A0JLT2 244 aaPredicted RBP19.46■□□□□ 0.71
VPS53-211ENST00000571805 PROB1E7EW31 1015 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 HSD17B6O14756 317 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 ITGA3P26006 1051 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 ODF3L1Q8IXM7 274 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 ZNF488Q96MN9 340 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 CLCC1Q96S66 551 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 MAGT1Q9H0U3 335 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 PLEKHF2Q9H8W4 249 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 ABI3Q9P2A4 366 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 RFNGQ9Y644 331 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 TECTAO75443 2155 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 MPLP40238 635 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 WNT5AP41221 380 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 AKR1C3P42330 323 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 ID3Q02535 119 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 CLINT1Q14677 625 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 C3AR1Q16581 482 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 TMEM252Q8N6L7 170 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 C15orf54Q8N8G6 183 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 KDF1Q8NAX2 398 aaPredicted RBP19.45■□□□□ 0.7
VPS53-211ENST00000571805 ARRDC1-AS1Q9H2J1 176 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 ESRP2Q9H6T0 727 aaKnown RBP19.45■□□□□ 0.7
VPS53-211ENST00000571805 BIN3Q9NQY0 253 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 ARHGAP21Q5T5U3 1957 aa19.45■□□□□ 0.7
VPS53-211ENST00000571805 C21orf140B9A014 251 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 SSSCA1O60232 199 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 PITX3O75364 302 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 FOLR2P14207 255 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 AKIRIN2Q53H80 203 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 TMEM171Q8WVE6 324 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 RIMS4Q9H426 269 aaPredicted RBP19.44■□□□□ 0.7
VPS53-211ENST00000571805 PLK3Q9H4B4 646 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 OPA3Q9H6K4 179 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 SPACA1Q9HBV2 294 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 TRBV6-6A0A0A6YYG2 114 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 TMEM50AO95807 157 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 VDAC1P21796 283 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 PLP2Q04941 152 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 LINC00596Q86U02 117 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 MED13Q9UHV7 2174 aa19.44■□□□□ 0.7
VPS53-211ENST00000571805 TRAV24A0A0B4J272 114 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 SPINK2P20155 84 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 PPP1CCP36873 323 aaKnown RBP19.43■□□□□ 0.7
VPS53-211ENST00000571805 PLGLB1Q02325 96 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 ZNF266Q14584 549 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 RNPS1Q15287 305 aaKnown RBP19.43■□□□□ 0.7
VPS53-211ENST00000571805 AWAT1Q58HT5 328 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 IQCF2Q8IXL9 164 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 FAM213BQ8TBF2 198 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 RPS10P5Q9NQ39 176 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 CELSR3Q9NYQ7 3312 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 PGLYRP1O75594 196 aaPredicted RBP19.43■□□□□ 0.7
VPS53-211ENST00000571805 SLC34A2O95436 690 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 ATP6V0CP27449 155 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 OR5D13Q8NGL4 314 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 C14orf79Q96F83 325 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 SLC25A31Q9H0C2 315 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 GLRX2Q9NS18 164 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 PRSS50Q9UI38 385 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 MPC1Q9Y5U8 109 aa19.43■□□□□ 0.7
VPS53-211ENST00000571805 A0A1B0GW64 132 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 C7orf77A4D0Y5 90 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 C3orf80F5H4A9 247 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 OMGP23515 440 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 RPL35P42766 123 aaKnown RBP19.42■□□□□ 0.7
VPS53-211ENST00000571805 ZNF880Q6PDB4 577 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 C2CD4CQ8TF44 421 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 ANKRD30BLA7E2S9 258 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 H0Y980 276 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 HS3ST1O14792 307 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 ZNF324BQ6AW86 544 aaPredicted RBP19.42■□□□□ 0.7
VPS53-211ENST00000571805 CMTM1Q8IZ96 169 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 ZFP82Q8N141 532 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 IL22RA2Q969J5 263 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 IP6K3Q96PC2 410 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 DOCK7Q96N67 2140 aa19.42■□□□□ 0.7
VPS53-211ENST00000571805 GNG3P63215 75 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 IL24Q13007 206 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 HIKESHIQ53FT3 197 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 ZNF573Q86YE8 665 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 OR2G3Q8NGZ4 309 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 RDH5Q92781 318 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 HIST1H2BAQ96A08 127 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 SLC35B3Q9H1N7 401 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 FBXO7Q9Y3I1 522 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 ESPL1Q14674 2120 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 LNP1A1A4G5 178 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 OR5B21A6NL26 309 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 TNFSF12O43508 249 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 IL18BPO95998 194 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 SP1P08047 785 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 SNRNP70P08621 437 aaKnown RBP19.41■□□□□ 0.7
VPS53-211ENST00000571805 MMP9P14780 707 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 MEOX1P50221 254 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 AKR1D1P51857 326 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 VAMP2P63027 116 aa19.41■□□□□ 0.7
VPS53-211ENST00000571805 HABP2Q14520 560 aaPredicted RBP19.41■□□□□ 0.7
VPS53-211ENST00000571805 FAM58AQ8N1B3 248 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms