RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FAM222BQ8WU58 562 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 LRRC29Q8WV35 223 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 PLPPR2Q96GM1 343 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SNX22Q96L94 193 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 OR2V2Q96R30 315 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ZNF2Q9BSG1 426 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 KRTAP9-9Q9BYP9 154 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 KRTAP9-4Q9BYQ2 154 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 MRPL37Q9BZE1 423 aaKnown RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 FAM234AQ9H0X4 552 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 TMEM165Q9HC07 324 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 DNAJB11Q9UBS4 358 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ZNF69Q9UC07 566 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ELF5Q9UKW6 265 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 TRAPPC2LQ9UL33 140 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 WIPI2Q9Y4P8 454 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SPTA1P02549 2419 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 DOPEY1Q5JWR5 2465 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 CELSR3Q9NYQ7 3312 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 TRAV38-1A0A0B4J264 116 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 TRAV24A0A0B4J272 114 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 A0A0B4J293 547 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 FAM172BPA6NC97 362 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 OOEPA6NGQ2 149 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 FAM90A27PA6NNH2 459 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 NPIPB11E5RHQ5 1161 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 H0YL77 283 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 SLC33A1O00400 549 aaPredicted RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 HS3ST1O14792 307 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 MGST3O14880 152 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 PAX4O43316 350 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 SPRY3O43610 288 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 DUS4LO95620 317 aaKnown RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 LHBP01229 141 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 GHRHP01286 108 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 IGHV1-46P01743 117 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 C1QBP02746 253 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 GIPP09681 153 aaPredicted RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 PGAM2P15259 253 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ANXA7P20073 488 aaKnown RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 PRDX2P32119 198 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 SNRPD2P62316 118 aaKnown RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 SRPXP78539 464 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ADORA2A-AS1P86434 159 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 DHODHQ02127 395 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 TLE1Q04724 770 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 MSMO1Q15800 293 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ABCA11PQ4W5N1 156 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 FAAP20Q6NZ36 180 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 KCTD9Q7L273 389 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 TMED4Q7Z7H5 227 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 LYG2Q86SG7 212 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 GLCCI1Q86VQ1 547 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 SGPP2Q8IWX5 399 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 CMTM1Q8IZ96 169 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ZNF561Q8N587 486 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 OR10J5Q8NHC4 309 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 MITD1Q8WV92 249 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 KIRREL1Q96J84 757 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 AKR1E2Q96JD6 320 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 LURAP1Q96LR2 239 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ZNF436Q9C0F3 470 aaPredicted RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 WDR13Q9H1Z4 485 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 DYNLRB1Q9NP97 96 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ZFP57Q9NU63 452 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 MBNL3Q9NUK0 354 aaKnown RBP6.72□□□□□ -1.33
VPS39-213ENST00000570062 CRIM1Q9NZV1 1036 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ZNF222Q9UK12 451 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 FZR1Q9UM11 496 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 FLVCR2Q9UPI3 526 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 PPP1R3CQ9UQK1 317 aa6.72□□□□□ -1.33
VPS39-213ENST00000570062 ARHGAP21Q5T5U3 1957 aa6.71□□□□□ -1.33
VPS39-213ENST00000570062 PTPRQQ9UMZ3 2332 aa6.71□□□□□ -1.33
VPS39-213ENST00000570062 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.71□□□□□ -1.34
VPS39-213ENST00000570062 ZSCAN5BA6NJL1 495 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 OR2AT4A6NND4 320 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 F8VVB4 439 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 F8VWA3 439 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 OR2A4O95047 310 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 HLA-AP01891 365 aaKnown RBP6.71□□□□□ -1.34
VPS39-213ENST00000570062 ZNF728P0DKX0 622 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 CD34P28906 385 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 FCGR2CP31995 323 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 HLA-DRB3P79483 266 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 CD83Q01151 205 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 DHRS2Q13268 280 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 PCSK4Q6UW60 755 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 NOXA1Q86UR1 476 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 LRP11Q86VZ4 500 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 DRAXINQ8NBI3 349 aaPredicted RBP6.71□□□□□ -1.34
VPS39-213ENST00000570062 ZBTB34Q8NCN2 500 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 OR2AK2Q8NG84 335 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 MARCH1Q8TCQ1 289 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 RDH5Q92781 318 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 MOB3AQ96BX8 217 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 ST6GAL2Q96JF0 529 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 ZNF488Q96MN9 340 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 OR2A7Q96R45 310 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 TMEM204Q9BSN7 226 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 SUCNR1Q9BXA5 334 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms