RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	IGHV4OR15-8	A0A075B7B6	117 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488		A0A087WW49	117 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	ZNF736	B4DX44	427 aa	Predicted RBP	12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	C12orf77	C9JDV5	145 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	SLC2A2	P11168	524 aa	Predicted RBP	12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	PDZK1IP1	Q13113	114 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	OR2T5	Q6IEZ7	315 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488		Q6P435	159 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	OR8H1	Q8NGG4	311 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	OR2T29	Q8NH02	315 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	MRGPRD	Q8TDS7	321 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	CNN2	Q99439	309 aa	Known RBP	12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	CHCHD6	Q9BRQ6	235 aa		12.45	□□□□□ -0.42
CLK3-223	ENST00000568488	IGKV1-12	A0A0C4DH73	117 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	CCDC182	A6NF36	153 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	IGKV1D-12	P01611	117 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	IGLV1-40	P01703	118 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	CD1B	P29016	333 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	KIR3DL2	P43630	455 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	TMEM236	Q5W0B7	351 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	PGAM4	Q8N0Y7	254 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	CHST4	Q8NCG5	386 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	DNAAF1	Q8NEP3	725 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	GIPC3	Q8TF64	312 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	RNF166	Q96A37	237 aa	Predicted RBP	12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	ELOVL1	Q9BW60	279 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	TOLLIP	Q9H0E2	274 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	MRM2	Q9UI43	246 aa	Known RBP	12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	STUB1	Q9UNE7	303 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	KMT2A	Q03164	3969 aa		12.44	□□□□□ -0.42
CLK3-223	ENST00000568488	OCM2	P0CE71	109 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	OCM	P0CE72	109 aa	Predicted RBP	12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	CDK5	Q00535	292 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	SLC16A12	Q6ZSM3	486 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	SLC35F2	Q8IXU6	374 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	YIPF7	Q8N8F6	280 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	OR51T1	Q8NGJ9	327 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	OR5D18	Q8NGL1	313 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	TEX12	Q9BXU0	123 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	BARHL1	Q9BZE3	327 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	ZCCHC4	Q9H5U6	513 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	NEK6	Q9HC98	313 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	PARP11	Q9NR21	331 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	ZNF580	Q9UK33	172 aa		12.43	□□□□□ -0.42
CLK3-223	ENST00000568488	TNC	P24821	2201 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	TRAV39	A0A0B4J263	110 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	TRAV41	A0A0B4J266	112 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	IGKV1-9	A0A0C4DH69	117 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	NPIPB11	E5RHQ5	1161 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	ZNF670-ZNF695	F2Z2N8	137 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	ATP6V0E1	O15342	81 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	KDM4B	O94953	1096 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	IGLV1-51	P01701	117 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	ATF1	P18846	271 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	PRKACB	P22694	351 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	SSTR5	P35346	364 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	GALE	Q14376	348 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	HDX	Q7Z353	690 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	TMEM104	Q8NE00	496 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	CASTOR1	Q8WTX7	329 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	PP6455	Q8WZ26	134 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	MNT	Q99583	582 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	HIPK2	Q9H2X6	1198 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	LINC00574	Q9H8X3	128 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	TVP23B	Q9NYZ1	205 aa		12.42	□□□□□ -0.42
CLK3-223	ENST00000568488	MRPS28	Q9Y2Q9	187 aa	Known RBP	12.42	□□□□□ -0.42
CLK3-223	ENST00000568488		H0YJX3	145 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	OSM	P13725	252 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	IL3RA	P26951	378 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	PAN3	Q58A45	887 aa	Known RBP	12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	RNLS	Q5VYX0	342 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	RDH10	Q8IZV5	341 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	CCDC54	Q8NEL0	328 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	OR10A7	Q8NGE5	316 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	SPACA5	Q96QH8	159 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	NR1H4	Q96RI1	486 aa	Predicted RBP	12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	TPSG1	Q9NRR2	321 aa		12.41	□□□□□ -0.42
CLK3-223	ENST00000568488	FAM90A10P	A6NDY2	464 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	IGHV3-11	P01762	117 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	KRT8	P05787	483 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	LGALS1	P09382	135 aa	Known RBP	12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	FST	P19883	344 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	ATP6V1B2	P21281	511 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	CDK5R1	Q15078	307 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	MMD	Q15546	238 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	FGGY	Q96C11	551 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	FLYWCH2	Q96CP2	140 aa	Known RBP	12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	C10orf35	Q96D05	121 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	ADAT3	Q96EY9	351 aa	Predicted RBP	12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	OPALIN	Q96PE5	141 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	ZNF556	Q9HAH1	456 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	FAM118A	Q9NWS6	357 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	MYRF	Q9Y2G1	1151 aa		12.4	□□□□□ -0.42
CLK3-223	ENST00000568488	LOC107986453	A0A1B0GWG9	222 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488		A0A1W2PN81	502 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	HSPB1	P04792	205 aa	Known RBP	12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	CHRNA7	P36544	502 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	ECSCR	Q19T08	205 aa		12.39	□□□□□ -0.43
CLK3-223	ENST00000568488	GTSCR1	Q86UQ5	136 aa		12.39	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms