RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CFHR2P36980 270 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 KCNJ3P48549 501 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 NPY4RP50391 375 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 SMIM21Q3B7S5 101 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PAN3Q58A45 887 aaKnown RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 Q5PR19 223 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 NCMAPQ5T1S8 102 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PRAMEF6Q5VXH4 476 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 LIN54Q6MZP7 749 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 Q6P435 159 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 WDR82Q6UXN9 313 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PEG10Q86TG7 708 aaKnown RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 NOXA1Q86UR1 476 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 LHFPL1Q86WI0 220 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 FAM90A1Q86YD7 464 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 C12orf45Q8N5I9 185 aaPredicted RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 UXS1Q8NBZ7 420 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 WFDC11Q8NEX6 87 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 TMEM185AQ8NFB2 350 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PPP1R35Q8TAP8 253 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 MARCH1Q8TCQ1 289 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 RDH5Q92781 318 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 PERPQ96FX8 193 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 MEGF10Q96KG7 1140 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 DMRTB1Q96MA1 342 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 FYTTD1Q96QD9 318 aaKnown RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 TRAF4Q9BUZ4 470 aaPredicted RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 MRPL37Q9BZE1 423 aaKnown RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 ZNF436Q9C0F3 470 aaPredicted RBP7.53□□□□□ -1.2
VPS39-207ENST00000563692 Q9N2K0 584 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 UFSP2Q9NUQ7 469 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 MGAT4CQ9UBM8 478 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 IL19Q9UHD0 177 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 VSIG4Q9Y279 399 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 RNF115Q9Y4L5 304 aa7.53□□□□□ -1.2
VPS39-207ENST00000563692 ITPR3Q14573 2671 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 IGHV3-64DA0A0J9YX35 117 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR2AT4A6NND4 320 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 SIRPB1O00241 398 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR2H2O95918 312 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 HLA-AP01891 365 aaKnown RBP7.52□□□□□ -1.21
VPS39-207ENST00000563692 C1QBP02746 253 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 TK1P04183 234 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR4A8P0C604 315 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 IRF2P14316 349 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 TNFRSF1AP19438 455 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 LMO1P25800 156 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 CD34P28906 385 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 SERPINF1P36955 418 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 GATA4P43694 442 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 GMFBP60983 142 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 IL13RA1P78552 427 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 TNFAIP6P98066 277 aaPredicted RBP7.52□□□□□ -1.21
VPS39-207ENST00000563692 MPPED2Q15777 294 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 TMEM128Q5BJH2 165 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 PRSS57Q6UWY2 283 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 ACP7Q6ZNF0 438 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 ZNF826PQ6ZT77 177 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 MOB1BQ7L9L4 216 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 LYG2Q86SG7 212 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 MUC20Q8N307 709 aaPredicted RBP7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR2AK2Q8NG84 335 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR11H7Q8NGC8 314 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR52B4Q8NGK2 314 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR11L1Q8NGX0 322 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 LRRC29Q8WV35 223 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 DYRK2Q92630 601 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 C18orf12Q96KH6 178 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 HYLS1Q96M11 299 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR2V2Q96R30 315 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 PHB2Q99623 299 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 EGLN1Q9GZT9 426 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 WDR13Q9H1Z4 485 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 SEBOXQ9HB31 216 aaPredicted RBP7.52□□□□□ -1.21
VPS39-207ENST00000563692 KCNIP1Q9NZI2 227 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 ZNF581Q9P0T4 197 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 IL36RNQ9UBH0 155 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 OR14J1Q9UGF5 321 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 KCNIP3Q9Y2W7 256 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 CELSR1Q9NYQ6 3014 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 ROS1P08922 2347 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 AKAP9Q99996 3911 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 ARID1AO14497 2285 aa7.52□□□□□ -1.21
VPS39-207ENST00000563692 IGKV1D-8A0A087WSZ0 117 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 C9orf170A2RU37 121 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 FAM172BPA6NC97 362 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 OR5H14A6NHG9 310 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 ZSCAN5BA6NJL1 495 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 LRRC30A6NM36 301 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 SLC33A1O00400 549 aaPredicted RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 HSPB6O14558 160 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 FABP7O15540 132 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 SLC22A5O76082 557 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 CTSDP07339 412 aaPredicted RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 GIPP09681 153 aaPredicted RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 ZNF728P0DKX0 622 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 CXCL3P19876 107 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 VAMP1P23763 118 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 ZBTB25P24278 435 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 LOXP28300 417 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms