RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 IGHMP01871 453 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 PMELP40967 661 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 SPINK9Q5DT21 86 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 DCAF12L2Q5VW00 463 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 MUC20Q8N307 709 aaPredicted RBP7.9□□□□□ -1.14
VPS39-205ENST00000562258 MRPL24Q96A35 216 aaKnown RBP7.9□□□□□ -1.14
VPS39-205ENST00000562258 HIPK2Q9H2X6 1198 aa7.9□□□□□ -1.14
VPS39-205ENST00000562258 TMEM131Q92545 1883 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 DPRXA6NFQ7 191 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 TSPAN4O14817 238 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 SPDEFO95238 335 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 CEACAM3P40198 252 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 GLIPR1P48060 266 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 LY6EQ16553 131 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 LAIR2Q6ISS4 152 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 OR2W3Q7Z3T1 314 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 C1QL2Q7Z5L3 287 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 TGIF2LYQ8IUE0 185 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 TGIF2LXQ8IUE1 241 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 C1orf174Q8IYL3 243 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 C10orf35Q96D05 121 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 PLEKHA3Q9HB20 300 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 FAM215AQ9Y5M1 114 aa7.9□□□□□ -1.15
VPS39-205ENST00000562258 YLPM1P49750 1951 aaKnown RBP7.9□□□□□ -1.15
VPS39-205ENST00000562258 PPIAL4CA0A0B4J2A2 164 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 NUDT19A8MXV4 375 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 TPPPO94811 219 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 IFNA2P01563 188 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 PPIAL4GP0DN37 164 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 IAPPP10997 89 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 HNF1AP20823 631 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ZMYND11Q15326 602 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 SMIM4Q8WVI0 70 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 GPHA2Q96T91 129 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 DHRS9Q9BPW9 319 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 C20orf85Q9H1P6 137 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 SSUH2Q9Y2M2 353 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ALG5Q9Y673 324 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 SSTR2P30874 369 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 RPS27AP62979 156 aaKnown RBP7.89□□□□□ -1.15
VPS39-205ENST00000562258 OR5T1Q8NG75 326 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ABHD14BQ96IU4 210 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ADGRG7Q96K78 797 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 TMUB1Q9BVT8 246 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 MGST3O14880 152 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 AGPAT2O15120 278 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 GPR137BO60478 399 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 PRAF2O60831 178 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 RBM11P57052 281 aaKnown RBP7.89□□□□□ -1.15
VPS39-205ENST00000562258 IRF3Q14653 427 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 LINC00303Q3SY05 128 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ZNF546Q86UE3 836 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 LYSMD2Q8IV50 215 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 OR52B4Q8NGK2 314 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 TRIM63Q969Q1 353 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 PGLYRP3Q96LB9 341 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 PPIL3Q9H2H8 161 aaKnown RBP7.89□□□□□ -1.15
VPS39-205ENST00000562258 YAE1D1Q9NRH1 226 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 RDH8Q9NYR8 311 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 PRR32B1ATL7 298 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 BRS3P32247 399 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 RAB13P51153 203 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 FCN2Q15485 313 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 TESK1Q15569 626 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 ZNF626Q68DY1 528 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 DCTN5Q9BTE1 182 aa7.89□□□□□ -1.15
VPS39-205ENST00000562258 REPIN1Q9BWE0 567 aaKnown RBP7.89□□□□□ -1.15
VPS39-205ENST00000562258 NKX2-1P43699 371 aaPredicted RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 PNLIPRP3Q17RR3 467 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 MPV17LQ2QL34 196 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 OR52L2PQ8NGH6 319 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 FAM222BQ8WU58 562 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 PBDC1Q9BVG4 233 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 SLC35D1Q9NTN3 355 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 PRR13Q9NZ81 148 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 IL36RNQ9UBH0 155 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 ANXA10Q9UJ72 324 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 hCG_38984A0A1B0GV85 526 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 C5orf63A6NC05 138 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 OOEPA6NGQ2 149 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 SULT1C2O00338 296 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 PLA2G7Q13093 441 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 MOGAT2Q3SYC2 334 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 HSD17B11Q8NBQ5 300 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 OR10S1Q8NGN2 331 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 UPRTQ96BW1 309 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 WBP1Q96G27 269 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 ZNF714Q96N38 554 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 SULT4A1Q9BR01 284 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 C7orf69Q9H7B7 122 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 PFDN2Q9UHV9 154 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 SF3B6Q9Y3B4 125 aaKnown RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 SLC25A15Q9Y619 301 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 LOC105371242A0A075B767 164 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 ADRA2CP18825 462 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 RRAS2P62070 204 aaPredicted RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 MMDQ15546 238 aa7.88□□□□□ -1.15
VPS39-205ENST00000562258 GLDNQ6ZMI3 551 aaPredicted RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 MSI2Q96DH6 328 aaKnown RBP7.88□□□□□ -1.15
VPS39-205ENST00000562258 CCL28Q9NRJ3 127 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms