RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PQLC1Q8N2U9 271 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 SETD9Q8NE22 299 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 RFESDQ8TAC1 157 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 MRGPRDQ8TDS7 321 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 CHPT1Q8WUD6 406 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 TMEM106AQ96A25 262 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 RCC1LQ96I51 464 aaKnown RBP10.05□□□□□ -0.8
SNX1-209ENST00000559961 KIRREL1Q96J84 757 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 DPCDQ9BVM2 203 aaPredicted RBP10.05□□□□□ -0.8
SNX1-209ENST00000559961 SPACA1Q9HBV2 294 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 BABAM2Q9NXR7 383 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 SMPD3Q9NY59 655 aaPredicted RBP10.05□□□□□ -0.8
SNX1-209ENST00000559961 TAS2R4Q9NYW5 299 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 ZMAT5Q9UDW3 170 aaKnown RBP10.05□□□□□ -0.8
SNX1-209ENST00000559961 ZNF281Q9Y2X9 895 aa10.05□□□□□ -0.8
SNX1-209ENST00000559961 EXOSC1Q9Y3B2 195 aaKnown RBP10.05□□□□□ -0.8
SNX1-209ENST00000559961 SERPINE3A8MV23 424 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 E9PI62 339 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 GAPDHP04406 335 aaKnown RBP10.04□□□□□ -0.8
SNX1-209ENST00000559961 SNRNP70P08621 437 aaKnown RBP10.04□□□□□ -0.8
SNX1-209ENST00000559961 GTF2F2P13984 249 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 GNG10P50151 68 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 RIPK1Q13546 671 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 HNF4GQ14541 408 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 C17orf58Q2M2W7 97 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 TTC23Q5W5X9 447 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 BAIAP2L2Q6UXY1 529 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 MOB3BQ86TA1 216 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 FOXRED2Q8IWF2 684 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 SUMF2Q8NBJ7 301 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 OR51A2Q8NGJ7 313 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 OR13A1Q8NGR1 328 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 OR10K1Q8NGX5 313 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 OR52N1Q8NH53 320 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 MYDGFQ969H8 173 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 GON7Q9BXV9 100 aa10.04□□□□□ -0.8
SNX1-209ENST00000559961 FGF20Q9NP95 211 aaPredicted RBP10.04□□□□□ -0.8
SNX1-209ENST00000559961 TRAV24A0A0B4J272 114 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 NCBP2LA6PVI3 153 aaKnown RBP10.03□□□□□ -0.8
SNX1-209ENST00000559961 NUDT19A8MXV4 375 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 LY6LH3BQJ8 138 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 CCRL2O00421 344 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 SPINT2O43291 252 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 IGHV3-7P01780 117 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 IGLL1P15814 213 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 SERPINA2P20848 420 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 GDNFP39905 211 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 GTF2A1P52655 376 aaPredicted RBP10.03□□□□□ -0.8
SNX1-209ENST00000559961 MPV17LQ2QL34 196 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 PIGYQ3MUY2 71 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 UNQ9370/PRO34162Q6UXP9 181 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 RNF144BQ7Z419 303 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 COMMD1Q8N668 190 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 DRAM1Q8N682 238 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 WFDC9Q8NEX5 89 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 OR56B4Q8NH76 319 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 WIPF2Q8TF74 440 aaPredicted RBP10.03□□□□□ -0.8
SNX1-209ENST00000559961 CYGBQ8WWM9 190 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 ARL11Q969Q4 196 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 PHF21AQ96BD5 680 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 TMEM80Q96HE8 168 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 SLC29A1Q99808 456 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 ZNF649Q9BS31 505 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 MCRIP2Q9BUT9 160 aaKnown RBP10.03□□□□□ -0.8
SNX1-209ENST00000559961 C8orf4Q9NR00 106 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 PSG11Q9UQ72 335 aa10.03□□□□□ -0.8
SNX1-209ENST00000559961 MCRIP1C9JLW8 97 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 E9PQ18 207 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SDCBPO00560 298 aaPredicted RBP10.02□□□□□ -0.81
SNX1-209ENST00000559961 FGF16O43320 207 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 CDRT1O95170 752 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 LIMS3P0CW19 117 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 LIMS4P0CW20 117 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SLC6A1P30531 599 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 RBM11P57052 281 aaKnown RBP10.02□□□□□ -0.81
SNX1-209ENST00000559961 TAS2R43P59537 309 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 PAX5Q02548 391 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SLC22A6Q4U2R8 563 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 YIF1BQ5BJH7 314 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 DEFB121Q5J5C9 76 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 RSBN1Q5VWQ0 802 aaPredicted RBP10.02□□□□□ -0.81
SNX1-209ENST00000559961 FOXB2Q5VYV0 432 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 ASCL4Q6XD76 172 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SLC35E3Q7Z769 313 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 JAGN1Q8N5M9 183 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 THRSPQ92748 146 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 LEAP2Q969E1 77 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SMIM19Q96E16 107 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 IFT22Q9H7X7 185 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 ZFP57Q9NU63 452 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 IL36GQ9NZH8 169 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 TRAPPC2LQ9UL33 140 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 DIMT1Q9UNQ2 313 aaKnown RBP10.02□□□□□ -0.81
SNX1-209ENST00000559961 VWFP04275 2813 aa10.02□□□□□ -0.81
SNX1-209ENST00000559961 SH2D7A6NKC9 451 aaPredicted RBP10.01□□□□□ -0.81
SNX1-209ENST00000559961 ADARB2-AS1A8MUL3 147 aa10.01□□□□□ -0.81
SNX1-209ENST00000559961 NPIPB11E5RHQ5 1161 aa10.01□□□□□ -0.81
SNX1-209ENST00000559961 AIPO00170 330 aa10.01□□□□□ -0.81
SNX1-209ENST00000559961 HSD17B6O14756 317 aa10.01□□□□□ -0.81
SNX1-209ENST00000559961 GEMIN2O14893 280 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms