RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OR2G3Q8NGZ4 309 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 PRDM14Q9GZV8 571 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 C11orf1Q9H5F2 150 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 PUS1Q9Y606 427 aaKnown RBP eCLIP11.02□□□□□ -0.64
LDLR-207ENST00000558013 KPTNQ9Y664 436 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 DMXL1Q9Y485 3027 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 RHBDL1O75783 438 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 TK1P04183 234 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 CLDN18P56856 261 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 OR2B8PP59922 312 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 RAB1AP62820 205 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 PRR18Q8N4B5 295 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 CCDC71LQ8N9Z2 235 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 OR2M7Q8NG81 312 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 OR51H1Q8NH63 302 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 TECTAO75443 2155 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 LINC01387J3KSC0 135 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 ZNF154Q13106 437 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 HIKESHIQ53FT3 197 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 TMEM252Q8N6L7 170 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 ZNF565Q8N9K5 539 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 IL1F10Q8WWZ1 152 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 C12orf49Q9H741 205 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 ZNF703Q9H7S9 590 aaPredicted RBP11.02□□□□□ -0.65
LDLR-207ENST00000558013 ZNF391Q9UJN7 358 aa11.02□□□□□ -0.65
LDLR-207ENST00000558013 K7N7A8 449 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 CER1O95813 267 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 DYNLT3P51808 116 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 SSPNQ14714 243 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 HAGHQ16775 308 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 NUFIP2Q7Z417 695 aaKnown RBP11.01□□□□□ -0.65
LDLR-207ENST00000558013 C9orf172C9J069 976 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 CHST1O43916 411 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 ACAA1P09110 424 aaPredicted RBP11.01□□□□□ -0.65
LDLR-207ENST00000558013 SELEP16581 610 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 LMO1P25800 156 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 UCP2P55851 309 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 FGF12P61328 243 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 ADAM5Q6NVV9 412 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 ZDHHC23Q8IYP9 409 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 PLPPR1Q8TBJ4 325 aa11.01□□□□□ -0.65
LDLR-207ENST00000558013 A0A1W2PR80 420 aa11□□□□□ -0.65
LDLR-207ENST00000558013 CEACAM21Q3KPI0 293 aa11□□□□□ -0.65
LDLR-207ENST00000558013 PCSK4Q6UW60 755 aa11□□□□□ -0.65
LDLR-207ENST00000558013 SLC16A13Q7RTY0 426 aa11□□□□□ -0.65
LDLR-207ENST00000558013 P4HA3Q7Z4N8 544 aa11□□□□□ -0.65
LDLR-207ENST00000558013 ZNF727A8MUV8 499 aa11□□□□□ -0.65
LDLR-207ENST00000558013 TRAPPC2LH3BP13 241 aa11□□□□□ -0.65
LDLR-207ENST00000558013 CDS2O95674 445 aa11□□□□□ -0.65
LDLR-207ENST00000558013 PTAFRP25105 342 aa11□□□□□ -0.65
LDLR-207ENST00000558013 HOXA6P31267 233 aa11□□□□□ -0.65
LDLR-207ENST00000558013 SUMF2Q8NBJ7 301 aa11□□□□□ -0.65
LDLR-207ENST00000558013 TMEM56Q96MV1 263 aa11□□□□□ -0.65
LDLR-207ENST00000558013 PLSCR2Q9NRY7 297 aa11□□□□□ -0.65
LDLR-207ENST00000558013 PRSS50Q9UI38 385 aa11□□□□□ -0.65
LDLR-207ENST00000558013 TMEM56-RWDD3S4R434 201 aa11□□□□□ -0.65
LDLR-207ENST00000558013 CD300LBA8K4G0 201 aa11□□□□□ -0.65
LDLR-207ENST00000558013 CA6P23280 308 aa11□□□□□ -0.65
LDLR-207ENST00000558013 WNT5AP41221 380 aa11□□□□□ -0.65
LDLR-207ENST00000558013 SULT1A1P50225 295 aa11□□□□□ -0.65
LDLR-207ENST00000558013 NMSQ5H8A3 153 aa11□□□□□ -0.65
LDLR-207ENST00000558013 OR2T2Q6IF00 324 aa11□□□□□ -0.65
LDLR-207ENST00000558013 SPSB3Q6PJ21 355 aa11□□□□□ -0.65
LDLR-207ENST00000558013 RNF122Q9H9V4 155 aa11□□□□□ -0.65
LDLR-207ENST00000558013 KCNJ16Q9NPI9 418 aa11□□□□□ -0.65
LDLR-207ENST00000558013 TAAR3PQ9P1P4 343 aa11□□□□□ -0.65
LDLR-207ENST00000558013 OR1A1Q9P1Q5 309 aa11□□□□□ -0.65
LDLR-207ENST00000558013 TRAV24A0A0B4J272 114 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 YKT6O15498 198 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 PGLYRP1O75594 196 aaPredicted RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 JMJD7P0C870 316 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 MEOX2P50222 304 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 Q6ZRM9 215 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 C15orf54Q8N8G6 183 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 Q8NFD4 153 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 TTTY12Q9BZ98 90 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 SLC35B3Q9H1N7 401 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 ERRFI1Q9UJM3 462 aaPredicted RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 BOKQ9UMX3 212 aaPredicted RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 LIPGQ9Y5X9 500 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 MAP1BP46821 2468 aaKnown RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 B4E171 279 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 TSPAN7P41732 249 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 PAX9P55771 341 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 HNF4GQ14541 408 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 OR1C1Q15619 314 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 FAM53AQ6NSI3 398 aaPredicted RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 UBALD2Q8IYN6 164 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 MRPL30Q8TCC3 161 aaKnown RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 POM121L2Q96KW2 1035 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 EGLN1Q9GZT9 426 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 LYRM2Q9NU23 88 aaPredicted RBP10.99□□□□□ -0.65
LDLR-207ENST00000558013 DCHS1Q96JQ0 3298 aa10.99□□□□□ -0.65
LDLR-207ENST00000558013 IGKV3D-15A0A087WSY6 115 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 EIF2S3LQ2VIR3 472 aaKnown RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 MKXQ8IYA7 352 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 ZNF295-AS1Q8N0V1 137 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 TMEM251Q8N6I4 163 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 TMEM45BQ96B21 275 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 IL17BQ9UHF5 180 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms