RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CGB7P0DN87 165 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 HIST1H1DP16402 221 aaKnown RBP10.54□□□□□ -0.72
SHMT2-227ENST00000557269 CDK2P24941 298 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 KCNJ3P48549 501 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 MEF2CQ06413 473 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-227ENST00000557269 RBM39Q14498 530 aaKnown RBP10.54□□□□□ -0.72
SHMT2-227ENST00000557269 GAPTQ8N292 157 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 Q8N7P7 452 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 OR13A1Q8NGR1 328 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 OR4K15Q8NH41 348 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 MRPL30Q8TCC3 161 aaKnown RBP10.54□□□□□ -0.72
SHMT2-227ENST00000557269 AP3S1Q92572 193 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 NXF2Q9GZY0 626 aaKnown RBP10.54□□□□□ -0.72
SHMT2-227ENST00000557269 SIRPDQ9H106 197 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 ONECUT1Q9UBC0 465 aa10.54□□□□□ -0.72
SHMT2-227ENST00000557269 TRAV18A0A075B6X5 111 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 A0A0G2JMP0 313 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 A0A0X1KG70 313 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 hADV38S2A0JD32 116 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 TMEM30CPA0ZSE6 113 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 H3BUI4 141 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MMP23AO75900 390 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 PTHLHP12272 177 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MMP9P14780 707 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MADCAM1Q13477 382 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 FAM189A2Q15884 450 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 ZNF260Q3ZCT1 412 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 CDNFQ49AH0 187 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MZT2AQ6P582 158 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 BTNL3Q6UXE8 466 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 LAX1Q8IWV1 398 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 OR4M2Q8NGB6 313 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MCFD2Q8NI22 146 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 MRGPRDQ8TDS7 321 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 CORO2AQ92828 525 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 TBX15Q96SF7 602 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 C7orf69Q9H7B7 122 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 LINC00312Q9Y6C7 94 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 CSPG4Q6UVK1 2322 aa10.53□□□□□ -0.72
SHMT2-227ENST00000557269 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.52□□□□□ -0.722e-7■■■■■ 32.4
SHMT2-227ENST00000557269 FUOMA2VDF0 154 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 C17orf98A8MV24 154 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 NAPSAO96009 420 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 APOA1P02647 267 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 RCC1P18754 421 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-227ENST00000557269 GDNFP39905 211 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 C17orf58Q2M2W7 97 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 CR1LQ2VPA4 569 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 UTF1Q5T230 341 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 BAIAP2L2Q6UXY1 529 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 TRAPPC6BQ86SZ2 158 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 UBALD1Q8TB05 177 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 S100A16Q96FQ6 103 aaKnown RBP10.52□□□□□ -0.73
SHMT2-227ENST00000557269 CMTM3Q96MX0 182 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 WDFY2Q96P53 400 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 C6orf62Q9GZU0 229 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-227ENST00000557269 NCOR1P1Q9H4R4 102 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHMT2-227ENST00000557269 KCNS2Q9ULS6 477 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 AUP1Q9Y679 476 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 F8P00451 2351 aa10.52□□□□□ -0.73
SHMT2-227ENST00000557269 DSCAML1Q8TD84 2053 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 TRGV10A0A0A0MS01 117 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 TMEM235A6NFC5 223 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 A8MV72 311 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-227ENST00000557269 C15orf65H3BRN8 121 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 J3QLI3 93 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 RGS5O15539 181 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 XRCC3O43542 346 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 SSX5O60225 188 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 TOX4O94842 621 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF728P0DKX0 622 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 OMGP23515 440 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 GATA3P23771 443 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 SSTR5P35346 364 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 GLP1RP43220 463 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 PRAMEF5Q5TYX0 476 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 FAM53AQ6NSI3 398 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-227ENST00000557269 IL17RELQ6ZVW7 336 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 VMO1Q7Z5L0 202 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 KIR3DL3Q8N743 410 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 RFESDQ8TAC1 157 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF714Q96N38 554 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 CMSS1Q9BQ75 279 aaKnown RBP10.51□□□□□ -0.73
SHMT2-227ENST00000557269 PCGF1Q9BSM1 259 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 AUNIPQ9H7T9 357 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 DIABLOQ9NR28 239 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 BATF3Q9NR55 127 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 SIRT7Q9NRC8 400 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 OR6C3Q9NZP0 311 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 LPAR3Q9UBY5 353 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF230Q9UIE0 474 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-227ENST00000557269 TRAPPC2LQ9UL33 140 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 UBE2J1Q9Y385 318 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-227ENST00000557269 KPTNQ9Y664 436 aa10.51□□□□□ -0.73
SHMT2-227ENST00000557269 IGHV3OR16-10A0A075B7F0 116 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 A0A0A6YYH2 397 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 A6NJ64 397 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 SERPINE3A8MV23 424 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 FAM25AB3EWG3 89 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms