RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DUXB	A0A1W2PPF3	345 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GNG4	P50150	75 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	UBE2G1	P62253	170 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2T10	Q8NGZ9	312 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR6X1	Q8NH79	312 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPACA9	Q96E40	222 aa	Predicted RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SMIM8	Q96KF7	97 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	UTP23	Q9BRU9	249 aa	Known RBP	4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPR61	Q9BZJ8	451 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	SLC7A10	Q9NS82	523 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	IL36RN	Q9UBH0	155 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	NAT8B	Q9UHF3	227 aa		4.35	□□□□□ -1.71
SYNE2-223	ENST00000557005	C20orf202	A1L168	122 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005		A6NNC1	897 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005		M0R2Z0	102 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	HRAS	P01112	189 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	BCL2	P10415	239 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PMEL	P40967	661 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GNG10	P50151	68 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	FABP6	P51161	128 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	RTP5	Q14D33	572 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	HIKESHI	Q53FT3	197 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	STUM	Q69YW2	141 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LINC00114	Q6XXX2	140 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	EIF4E3	Q8N5X7	224 aa	Known RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	KDF1	Q8NAX2	398 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	MRGPRF	Q96AM1	343 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	SPSB1	Q96BD6	273 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	UCN2	Q96RP3	112 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	ABHD14A	Q9BUJ0	271 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CTDSP1	Q9GZU7	261 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CYTL1	Q9NRR1	136 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	B3GAT1	Q9P2W7	334 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TTC3	P53804	2025 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LOC102723971	A0A1B0GUV8	181 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGSF23	A1L1A6	192 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRAF3IP2	O43734	574 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR7C2	O60412	319 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PDCD6	O75340	191 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TOX4	O94842	621 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	SMIM10L1	P0DMW3	83 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	FCAR	P24071	287 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	IER3	P46695	156 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PTTG1IP	P53801	180 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CXorf66	Q5JRM2	361 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	DCAF12	Q5T6F0	453 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GFI1B	Q5VTD9	330 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR4A4P	Q8NGN8	299 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2V1	Q8NHB1	315 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GALM	Q96C23	342 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	SMIM10	Q96HG1	83 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TMEM147	Q9BVK8	224 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LYRM2	Q9NU23	88 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	HDGFL3	Q9Y3E1	203 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LRRC3C	A6NJW4	275 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	DXO	O77932	396 aa	Known RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CNN1	P51911	297 aa	Known RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	HLA-DRB5	Q30154	266 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	ASPHD2	Q6ICH7	369 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	DEGS2	Q6QHC5	323 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	ZNF818P	Q6ZRF7	136 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR5B3	Q8NH48	314 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	NEIL1	Q96FI4	390 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TRIB1	Q96RU8	372 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	TP53RK	Q96S44	253 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GABRG3	Q99928	467 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	OR2H1	Q9GZK4	316 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	RBKS	Q9H477	322 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GPR27	Q9NS67	375 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LHFPL6	Q9Y693	200 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005		F8VVB4	439 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005		F8VWA3	439 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	LINC01387	J3KSC0	135 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CHEK1	O14757	476 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	SCT	P09683	121 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	IGFBP3	P17936	291 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	MDH2	P40926	338 aa	Known RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PNRC1	Q12796	327 aa	Predicted RBP	4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	C3AR1	Q16581	482 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	C1orf100	Q5SVJ3	147 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	GALNT14	Q96FL9	552 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	KCNK17	Q96T54	332 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	CHST5	Q9GZS9	411 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	PSG11	Q9UQ72	335 aa		4.34	□□□□□ -1.71
SYNE2-223	ENST00000557005	COLCA2	A8K830	154 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	SIAH2	O43255	324 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	FGF16	O43320	207 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	FCGR3B	O75015	233 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	SELE	P16581	610 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	TMEM11	P17152	192 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	RPS23	P62266	143 aa	Known RBP	4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	FOXO1	Q12778	655 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	C1QL2	Q7Z5L3	287 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	BLNK	Q8WV28	456 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	H1FX	Q92522	213 aa	Known RBP	4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	ADIPOR1	Q96A54	375 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	TMEM230	Q96A57	120 aa		4.34	□□□□□ -1.72
SYNE2-223	ENST00000557005	C18orf12	Q96KH6	178 aa		4.34	□□□□□ -1.72

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