RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	GATA3	P23771	443 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	ZFP36	P26651	326 aa	Known RBP	10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	TNFSF8	P32971	234 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	C6orf183	Q5T699	404 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	TRAT1	Q6PIZ9	186 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	FAM131A	Q6UXB0	335 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	SNX29P2	Q8IUI4	249 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	DTX3	Q8N9I9	347 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	OR4M2	Q8NGB6	313 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	DYRK2	Q92630	601 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	TMEM186	Q96B77	213 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	COQ2	Q96H96	371 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	C1orf159	Q96HA4	380 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	C18orf12	Q96KH6	178 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	COX4I2	Q96KJ9	171 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	DMRTB1	Q96MA1	342 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	NCOR1P1	Q9H4R4	102 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	AUNIP	Q9H7T9	357 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	C19orf12	Q9NSK7	152 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	ONECUT1	Q9UBC0	465 aa		10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	UBE2J1	Q9Y385	318 aa	Predicted RBP	10.35	□□□□□ -0.75
ABCD4-223	ENST00000555904	C22orf46	C9J442	243 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	MT-ND4	P03905	459 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	PRSS3	P35030	304 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	CBX5	P45973	191 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	MADCAM1	Q13477	382 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	ZNF260	Q3ZCT1	412 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	METTL11B	Q5VVY1	283 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	DCAF12L2	Q5VW00	463 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	OLFML2A	Q68BL7	652 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	TMEM200B	Q69YZ2	307 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	PYHIN1	Q6K0P9	492 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	LINC00299	Q6ZSB3	139 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	RTN4RL2	Q86UN3	420 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	CIART	Q8N365	385 aa	Predicted RBP	10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	OR6Q1	Q8NGQ2	317 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	OR4K15	Q8NH41	348 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	C8orf46	Q8TAG6	207 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	MRGPRD	Q8TDS7	321 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	CCDC107	Q8WV48	283 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	MSI2	Q96DH6	328 aa	Known RBP	10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	ZNF714	Q96N38	554 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	IFT46	Q9NQC8	304 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	HIF1AN	Q9NWT6	349 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	KCNK7	Q9Y2U2	307 aa		10.34	□□□□□ -0.75
ABCD4-223	ENST00000555904	KIR2DS1	A0A191URI9	304 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF729	A6NN14	1252 aa	Predicted RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	SPINT2	O43291	252 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	FCN3	O75636	299 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	NAPSA	O96009	420 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	LPL	P06858	475 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	MELTF	P08582	738 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	INHBB	P09529	407 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF728	P0DKX0	622 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	CD99	P14209	185 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF16	P17020	682 aa	Predicted RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	GZMH	P20718	246 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	DTYMK	P23919	212 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	KIR2DS4	P43632	304 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	DVL1P1	P54792	670 aa	Predicted RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	MRPS10	P82664	201 aa	Known RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	KIR2DS1	Q14954	304 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF554	Q86TJ5	538 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	GAPT	Q8N292	157 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	KIR3DL3	Q8N743	410 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	LY6G5B	Q8NDX9	201 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	MRPL30	Q8TCC3	161 aa	Known RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	NUDCD2	Q8WVJ2	157 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	HDHD3	Q9BSH5	251 aa	Predicted RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	SCPEP1	Q9HB40	452 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	TAS2R3	Q9NYW6	316 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	SETX	Q7Z333	2677 aa	Known RBP	10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	CSMD1	Q96PZ7	3565 aa		10.33	□□□□□ -0.76
ABCD4-223	ENST00000555904	KBTBD11-OT1	A0A1B0GTJ5	212 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	MEX3A	A1L020	520 aa	Known RBP	10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904		J3QLI3	93 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904		M0R1W7	72 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	ORC5	O43913	435 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	HLA-DQB1	P01920	261 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	FCGR3A	P08637	254 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	FOSL1	P15407	271 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	ACTB	P60709	375 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	ACTG1	P63261	375 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF273	Q14593	569 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	FAHD2B	Q6P2I3	314 aa	Predicted RBP	10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	PRR18	Q8N4B5	295 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	OR13A1	Q8NGR1	328 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	FCAMR	Q8WWV6	532 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	CORO2A	Q92828	525 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	FAHD2A	Q96GK7	314 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	ZNF286A	Q9HBT8	521 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	MMP26	Q9NRE1	261 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	MBNL3	Q9NUK0	354 aa	Known RBP	10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	CALY	Q9NYX4	217 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	OPN4	Q9UHM6	478 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	KCNS2	Q9ULS6	477 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	INSIG2	Q9Y5U4	225 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	KPTN	Q9Y664	436 aa		10.32	□□□□□ -0.76
ABCD4-223	ENST00000555904	NOTCH2	Q04721	2471 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms