RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CCL28Q9NRJ3 127 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF629Q9UEG4 869 aaPredicted RBP7.17□□□□□ -1.26
SYNE2-220ENST00000555612 UBE2L3P68036 154 aaKnown RBP7.17□□□□□ -1.26
SYNE2-220ENST00000555612 LIAT1Q6ZQX7 453 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 MYPOPQ86VE0 399 aaPredicted RBP7.17□□□□□ -1.26
SYNE2-220ENST00000555612 RNF133Q8WVZ7 376 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 C10orf35Q96D05 121 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 SRRQ9GZT4 340 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 UFC1Q9Y3C8 167 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 AUP1Q9Y679 476 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 QSER1Q2KHR3 1735 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 PDZK1IP1Q13113 114 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 DGAT2L7PQ6IED9 249 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 GAPTQ8N292 157 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 NUP37Q8NFH4 326 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 SFXN3Q9BWM7 321 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 ANXA10Q9UJ72 324 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 SPTA1P02549 2419 aa7.17□□□□□ -1.26
SYNE2-220ENST00000555612 TRIP12Q14669 1992 aaPredicted RBP7.17□□□□□ -1.26
SYNE2-220ENST00000555612 FFAR1O14842 300 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 MGAT2Q10469 447 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PCOLCEQ15113 449 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ZBTB44Q8NCP5 570 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SLC26A10Q8NG04 563 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ATP5SQ99766 215 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 NUDT16L1Q9BRJ7 211 aaKnown RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 TGIF2Q9GZN2 237 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 RNF122Q9H9V4 155 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 POLR2AP24928 1970 aaKnown RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 TSPAN2O60636 221 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SNCGO76070 127 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 CYB5R3P00387 301 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 HLA-DRB3P79483 266 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF826PQ6ZT77 177 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 MTFP1Q9UDX5 166 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 CEP290O15078 2479 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SPINK4O60575 86 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 RAB18Q9NP72 206 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SLC2A8Q9NY64 477 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PRR13Q9NZ81 148 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ARL2-SNX15V9GYD0 113 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 FAM106CPP0CH98 169 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 FGF9P31371 208 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PJVKQ0ZLH3 352 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 MPV17LQ2QL34 196 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PPP1R32Q7Z5V6 425 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 OR10Z1Q8NGY1 313 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 MED19A0JLT2 244 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 BCL2L11O43521 198 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SYNGR1O43759 233 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 FAM27BQ5VT28 67 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 FA2HQ7L5A8 372 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ZPLD1Q8TCW7 415 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SH2D2AQ9NP31 389 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 SIRT7Q9NRC8 400 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 K7N7A8 449 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 G6PCP35575 357 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 CRYBB2P43320 205 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 CDC34P49427 236 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 RAB32Q13637 225 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 RNFT1Q5M7Z0 435 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 GLDNQ6ZMI3 551 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PDPNQ86YL7 162 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 C1orf174Q8IYL3 243 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 OR1K1Q8NGR3 316 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 EAF1Q96JC9 268 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 GPR137Q96N19 417 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 TRAF4Q9BUZ4 470 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-220ENST00000555612 CHST5Q9GZS9 411 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 PRDM14Q9GZV8 571 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 ZDHHC11Q9H8X9 412 aa7.16□□□□□ -1.26
SYNE2-220ENST00000555612 LOC102723971A0A1B0GUV8 181 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 GSTZ1O43708 216 aaPredicted RBP7.15□□□□□ -1.26
SYNE2-220ENST00000555612 NDUFB6O95139 128 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF883P0CG24 379 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 CD200P41217 278 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 AMTP48728 403 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 PRNDQ9UKY0 176 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 GALP22466 123 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 DHRS2Q13268 280 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 Q1RN00 199 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 C4orf17Q53FE4 359 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 DTD1Q8TEA8 209 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 FAM222BQ8WU58 562 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 CXorf58Q96LI9 332 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 GSX2Q9BZM3 304 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 MAP1LC3B2A6NCE7 125 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 NGFRP08138 427 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 DAOP14920 347 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 ID1P41134 155 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 ARF6P62330 175 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 POLR2GP62487 172 aaKnown RBP eCLIP7.15□□□□□ -1.26
SYNE2-220ENST00000555612 LSM11P83369 360 aaKnown RBP eCLIP7.15□□□□□ -1.26
SYNE2-220ENST00000555612 C11orf87Q6NUJ2 197 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 MUC15Q8N387 334 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 SSMEM1Q8WWF3 244 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 MAP1LC3BQ9GZQ8 125 aa7.15□□□□□ -1.26
SYNE2-220ENST00000555612 C9orf170A2RU37 121 aa7.15□□□□□ -1.27
SYNE2-220ENST00000555612 GNG4P50150 75 aa7.15□□□□□ -1.27
SYNE2-220ENST00000555612 SSX1Q16384 188 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms