RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 UMODP07911 640 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 SELEP16581 610 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 DYNLT3P51808 116 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 DVL1P1P54792 670 aaPredicted RBP13.59□□□□□ -0.23
CUX1-211ENST00000546411 RTN4RL2Q86UN3 420 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 C10orf35Q96D05 121 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 WSB1Q9Y6I7 421 aa13.59□□□□□ -0.23
CUX1-211ENST00000546411 TMEM30CPA0ZSE6 113 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 RAB19A4D1S5 217 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 PMS2P1A4D2B8 440 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 ABCD4O14678 606 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 NKX2-8O15522 239 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 RUNX1Q01196 453 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 SMIM7Q9BQ49 75 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 MRPL13Q9BYD1 178 aaKnown RBP13.58□□□□□ -0.24
CUX1-211ENST00000546411 OR5B21A6NL26 309 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 B4E171 279 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 C17orf112F2Z3M2 114 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 OPN1MWP04001 364 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 CD74P04233 296 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 OPN1MW2P0DN77 364 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 OPN1MW3P0DN78 364 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 SLC25A4P12235 298 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 NQO2P16083 231 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 TSPAN7P41732 249 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 SLC25A40Q8TBP6 338 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 SIGLEC12Q96PQ1 595 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 C12orf57Q99622 126 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 RAB9BQ9NP90 201 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 TRDCB7Z8K6 153 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 MFNGO00587 321 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 FCGR3BO75015 233 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 WNT5BQ9H1J7 359 aa13.58□□□□□ -0.24
CUX1-211ENST00000546411 DNPH1O43598 174 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 VDAC1P21796 283 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 DTYMKP23919 212 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 MPC1Q9Y5U8 109 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 LIPGQ9Y5X9 500 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 LNP1A1A4G5 178 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 C5orf63A6NC05 138 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 MPGP29372 298 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 ZNF345Q14585 488 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 MRPL14Q6P1L8 145 aaKnown RBP13.57□□□□□ -0.24
CUX1-211ENST00000546411 ZNF441Q8N8Z8 693 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 LRRC29Q8WV35 223 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 TMEM68Q96MH6 324 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 FOXJ2Q9P0K8 574 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 ATP23Q9Y6H3 246 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 CREBBPQ92793 2442 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 IGKV1-9A0A0C4DH69 117 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 SNRPEP62304 92 aaKnown RBP13.57□□□□□ -0.24
CUX1-211ENST00000546411 FAM3AP98173 230 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 IL13RA2Q14627 380 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 EIF2S3LQ2VIR3 472 aaKnown RBP13.57□□□□□ -0.24
CUX1-211ENST00000546411 FBXW9Q5XUX1 488 aa13.57□□□□□ -0.24
CUX1-211ENST00000546411 PAQR4Q8N4S7 273 aaPredicted RBP13.57□□□□□ -0.24
CUX1-211ENST00000546411 PRRG2O14669 202 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 IGFBP3P17936 291 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 GNG10P50151 68 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 RAB5CP51148 216 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 CXorf66Q5JRM2 361 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 ZNF826PQ6ZT77 177 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 OVCH2Q7RTZ1 564 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 IGLV3-12A0A075B6K2 115 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 CYB5BO43169 146 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 EWSR1Q01844 656 aaKnown RBP eCLIP13.56□□□□□ -0.242e-6■■■□□ 16.9
CUX1-211ENST00000546411 IMMP1LQ96LU5 166 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 CACNA1BQ00975 2339 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 HEATR1Q9H583 2144 aaKnown RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 NPIPB13A6NJU9 1138 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 ZNF705FA8MVS1 300 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 NPIPB4C9JG80 1138 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 H7BYZ3 331 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 PPP1R2P9O14990 202 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 ZNF705DP0CH99 300 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 ZNF705BP0CI00 300 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 FHITP49789 147 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 AESQ08117 197 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 TMEM211Q6ICI0 200 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 PUSL1Q8N0Z8 303 aaKnown RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 C21orf140B9A014 251 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 MT-ND4LP03901 98 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 PSG2P11465 335 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 FGF7P21781 194 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 Q96M66 194 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 S1PR3Q99500 378 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 SLC25A22Q9H936 323 aa13.56□□□□□ -0.24
CUX1-211ENST00000546411 ZNF71Q9NQZ8 489 aaPredicted RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 RCC2Q9P258 522 aaKnown RBP13.56□□□□□ -0.24
CUX1-211ENST00000546411 MBPP02686 304 aaPredicted RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 MUC1P15941 1255 aaPredicted RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 C17orf82Q86X59 251 aaPredicted RBP13.55□□□□□ -0.24
CUX1-211ENST00000546411 OR5A2Q8NGI9 324 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 SLC25A28Q96A46 364 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 TVP23CQ96ET8 276 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 CABLES2Q9BTV7 478 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 RSRP1Q9BUV0 290 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 TLNRD1Q9H1K6 362 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 NDRG3Q9UGV2 375 aa13.55□□□□□ -0.24
CUX1-211ENST00000546411 CEBPDP49716 269 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms