RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 OR52L1Q8NGH7 329 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 OR2T10Q8NGZ9 312 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 OR9G1Q8NH87 305 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 PHLDA1Q8WV24 401 aaPredicted RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 EMG1Q92979 244 aaKnown RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 SLAMF9Q96A28 289 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 FLYWCH2Q96CP2 140 aaKnown RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 MS4A10Q96PG2 267 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 AMELYQ99218 206 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 S1PR3Q99500 378 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 MNTQ99583 582 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 EBF4Q9BQW3 602 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 NEURL2Q9BR09 285 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 OVOL2Q9BRP0 275 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 ROPN1BQ9BZX4 212 aaPredicted RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 TOLLIPQ9H0E2 274 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 WFDC10AQ9H1F0 79 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 ROPN1Q9HAT0 212 aaPredicted RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 PARP11Q9NR21 331 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 PCDHB16Q9NRJ7 776 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 IL36RNQ9UBH0 155 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF107Q9UII5 783 aaPredicted RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 MRPS28Q9Y2Q9 187 aaKnown RBP3.62□□□□□ -1.83
LIMS1-214ENST00000542845 A3GALT2U3KPV4 340 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 U3KQV3 271 aa3.62□□□□□ -1.83
LIMS1-214ENST00000542845 TRAV41A0A0B4J266 112 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 IGHV1-3A0A0C4DH29 117 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 TRBV4-1A0A0J9YWV2 114 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 A0A1W2PN81 502 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 SAC3D1A6NKF1 404 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 OR11H12B2RN74 326 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 M0R2N4 97 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 MGST3O14880 152 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 ARPC3O15145 178 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 NOS1APO75052 506 aaPredicted RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 DIRAS1O95057 198 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 GAPDHP04406 335 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 HSPB1P04792 205 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 H1F0P07305 194 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 LGALS1P09382 135 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 CD7P09564 240 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 PRKACAP17612 351 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 CHRNA7P36544 502 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 PTGFRP43088 359 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 KIR3DL2P43630 455 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 NUDT2P50583 147 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 F2RL1P55085 397 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 P2RX3P56373 397 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 TIRAPP58753 221 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 MFGE8Q08431 387 aaPredicted RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 CYLC2Q14093 348 aaPredicted RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 ECSCRQ19T08 205 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 IFI44LQ53G44 452 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 LCN12Q6JVE5 192 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 C16orf54Q6UWD8 224 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 LINC00322Q6ZN03 302 aaPredicted RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 Q6ZRM9 215 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 LYG2Q86SG7 212 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 OR8H3Q8N146 312 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 SLC37A3Q8NCC5 494 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 OR10X1Q8NGY0 326 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 RFESDQ8TAC1 157 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 OR51E1Q8TCB6 317 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 MYOZ3Q8TDC0 251 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 RNF133Q8WVZ7 376 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 CEP19Q96LK0 163 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 CADM1Q9BY67 442 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 MED20Q9H944 212 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 HES4Q9HCC6 221 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 TAS2R3Q9NYW6 316 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 MTCH1Q9NZJ7 389 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 ENPP5Q9UJA9 477 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 COPS3Q9UNS2 423 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 PSG11Q9UQ72 335 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 FBXO7Q9Y3I1 522 aa3.61□□□□□ -1.83
LIMS1-214ENST00000542845 FAM32AQ9Y421 112 aaKnown RBP3.61□□□□□ -1.83
LIMS1-214ENST00000542845 PQLC2LA1A4F0 135 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 FUOMA2VDF0 154 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ZNF736B4DX44 427 aaPredicted RBP3.6□□□□□ -1.83
LIMS1-214ENST00000542845 DLGAP1O14490 977 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 HSD17B6O14756 317 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ATP6V0E1O15342 81 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 IDH3BO43837 385 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SCGB1D1O95968 90 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 MOSP00540 346 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 LYNP07948 512 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 SPI1P17947 270 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 FASP25445 335 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 CD34P28906 385 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 OPRL1P41146 370 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 OR3A1P47881 315 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 NPBWR2P48146 333 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 FAM3BP58499 235 aaPredicted RBP3.6□□□□□ -1.83
LIMS1-214ENST00000542845 ERVK11-1P61568 191 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 TNFRSF9Q07011 255 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 IL24Q13007 206 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 CRMP1Q14194 572 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 GUCA2BQ16661 112 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 TEX30Q5JUR7 227 aa3.6□□□□□ -1.83
LIMS1-214ENST00000542845 KRBOX4Q5JUW0 171 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms