RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 GGNBP1Q5YKI7 109 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 ZNF818PQ6ZRF7 136 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 LYZL2Q7Z4W2 148 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 LINC00596Q86U02 117 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 LDLRAD3Q86YD5 345 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 TP53RKQ96S44 253 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 CXXC4Q9H2H0 198 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 OR1A1Q9P1Q5 309 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 NCOR2Q9Y618 2525 aa12.27□□□□□ -0.44
CLIP1-216ENST00000541410 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-216ENST00000541410 MSGN1A6NI15 193 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 SCGB1D2O95969 90 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 HAND1O96004 215 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 CRYAAP02489 173 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 SLC25A4P12235 298 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 KITLGP21583 273 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 CCKARP32238 428 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 TMEM187Q14656 261 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 WDR82Q6UXN9 313 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 SLC38A6Q8IZM9 456 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 LHFPL5Q8TAF8 219 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 GLYATL2Q8WU03 294 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 POM121Q96HA1 1249 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 C2orf50Q96LR7 162 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 CCL28Q9NRJ3 127 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 METRNQ9UJH8 293 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 TRAPPC2LQ9UL33 140 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 KCNIP3Q9Y2W7 256 aa12.27□□□□□ -0.45
CLIP1-216ENST00000541410 A0A0B4J2A0 478 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 PRSS44E7EML9 344 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 ATXN7O15265 892 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 DIRAS3O95661 229 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 PTBP3O95758 552 aaKnown RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 LUMP51884 338 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 FAM74A1Q5RGS3 127 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 FAM53AQ6NSI3 398 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 TMEM65Q6PI78 240 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 PCSK4Q6UW60 755 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 GAPTQ8N292 157 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 TPRX1Q8N7U7 411 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 POC1AQ8NBT0 407 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 INO80EQ8NBZ0 244 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 RELL2Q8NC24 303 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 GALNT11Q8NCW6 608 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 SHPKQ9UHJ6 478 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 KIR2DS1A0A191URI9 304 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 ZSCAN5BA6NJL1 495 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 TMEM210A6NLX4 147 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 SH2D1BO14796 132 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 KIR2DS4P43632 304 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 SNTB1Q13884 538 aaKnown RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 KIR2DS1Q14954 304 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 MBNL2Q5VZF2 373 aaKnown RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 ACOT7LQ6ZUV0 252 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 Q8IYB0 196 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF565Q8N9K5 539 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 DMRTA2Q96SC8 542 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 SLX1AQ9BQ83 275 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 RSRP1Q9BUV0 290 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF471Q9BX82 626 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-216ENST00000541410 SLC5A7Q9GZV3 580 aa12.26□□□□□ -0.45
CLIP1-216ENST00000541410 KANTRA0A1W2PQU2 76 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 LEUTXA8MZ59 168 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 SPRY3O43610 288 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 CYCSP99999 105 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF146Q15072 292 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 TBC1D26Q86UD7 250 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 KCNRGQ8N5I3 272 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 PIK3IP1Q96FE7 263 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 GSX2Q9BZM3 304 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 PARP12Q9H0J9 701 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 ESRP2Q9H6T0 727 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 TREM2Q9NZC2 230 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 TPD52L2O43399 206 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 RAB14P61106 215 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 HLA-DRB3P79483 266 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 AESQ08117 197 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 EIF2S3LQ2VIR3 472 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 Q6ZS49 121 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 OR1S1Q8NH92 325 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 OR10J5Q8NHC4 309 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 LRRC29Q8WV35 223 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 DHRS9Q9BPW9 319 aa12.25□□□□□ -0.45
CLIP1-216ENST00000541410 USB1Q9BQ65 265 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 ERRFI1Q9UJM3 462 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 LSM5Q9Y4Y9 91 aaKnown RBP12.25□□□□□ -0.45
CLIP1-216ENST00000541410 A0A0D9SG52 128 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 MPPED1O15442 326 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 ACP7Q6ZNF0 438 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF497Q6ZNH5 498 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 WFDC8Q8IUA0 241 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 MSI2Q96DH6 328 aaKnown RBP12.24□□□□□ -0.45
CLIP1-216ENST00000541410 CXorf58Q96LI9 332 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 DSCAMO60469 2012 aa12.24□□□□□ -0.45
CLIP1-216ENST00000541410 IGHV3OR15-7A0A075B7D8 119 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 C3orf85A0A1B0GTC6 90 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 OR2F2O95006 317 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 EGR1P18146 543 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 UCP3P55916 312 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 OR2F1Q13607 317 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms