RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 VAMP3Q15836 100 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 PRSS57Q6UWY2 283 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 MEX3BQ6ZN04 569 aaKnown RBP8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 CALHM1Q8IU99 346 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 OR2T10Q8NGZ9 312 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 HSPB9Q9BQS6 159 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 ABHD6Q9BV23 337 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 B9D1Q9UPM9 204 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 EP300Q09472 2414 aaPredicted RBP8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 TRAV34A0A0B4J273 112 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 LMX1BO60663 402 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 HYPMO75409 117 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 BCL2P10415 239 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 PSG1P11464 419 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 HSD11B1P28845 292 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 CLDN18P56856 261 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 TPPP2P59282 170 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 KIR2DS3Q14952 304 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 SPATA45Q537H7 98 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 VWA1Q6PCB0 445 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 LINC00114Q6XXX2 140 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 COX15Q7KZN9 410 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 CENPVQ7Z7K6 275 aaPredicted RBP8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 MYPOPQ86VE0 399 aaPredicted RBP8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 MCEMP1Q8IX19 187 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 DOK4Q8TEW6 326 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 VN1R1Q9GZP7 353 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 MANBALQ9NQG1 85 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 PRSS50Q9UI38 385 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 KIAA2026Q5HYC2 2103 aa8.22□□□□□ -1.09
CTNNA1-243ENST00000540387 K7ERU9 68 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 CLEC3AO75596 197 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 RAD51DO75771 328 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 H2BFMP0C1H6 154 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 IGLC2P0DOY2 106 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 IGLC3P0DOY3 106 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 PVRP15151 417 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 CMPK1P30085 196 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 SFTPDP35247 375 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 EMP2P54851 167 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 RTP5Q14D33 572 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 TMEM41BQ5BJD5 291 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 PLAC9Q5JTB6 97 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 WFDC8Q8IUA0 241 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 OR5D18Q8NGL1 313 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 PINX1Q96BK5 328 aaKnown RBP8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 REEP6Q96HR9 211 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 LRFN3Q9BTN0 628 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 BET1LQ9NYM9 111 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 CLN8Q9UBY8 286 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 NAT8Q9UHE5 227 aa8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 TNRC6BQ9UPQ9 1833 aaKnown RBP8.21□□□□□ -1.09
CTNNA1-243ENST00000540387 A0A0A6YYD4 124 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 FAM24AA6NFZ4 105 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 CDS2O95674 445 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 OR1D5P58170 312 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 PAFAH1B2P68402 229 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 RHOGP84095 191 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 RUNX1Q01196 453 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 BSXQ3C1V8 233 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 PRR27Q6MZM9 219 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 RNF44Q7L0R7 432 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 OOSP2Q86WS3 158 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 OR52M1Q8NGK5 317 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 OTOSQ8NHW6 89 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 OR6C1Q96RD1 312 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 MEGF9Q9H1U4 602 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 HIPK2Q9H2X6 1198 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF665Q9H7R5 613 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 TMEM131Q92545 1883 aa8.21□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF732B4DXR9 585 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SOCS1O15524 211 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ST8SIA3O43173 380 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CER1O95813 267 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 GLB1P16278 677 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 RPL15P61313 204 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 RPS4XP62701 263 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CSNK2A1P68400 391 aaPredicted RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 TCF15Q12870 199 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SMIM21Q3B7S5 101 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SNAI3Q3KNW1 292 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 PLA2G2CQ5R387 149 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ZAR1Q86SH2 424 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CSNK2A3Q8NEV1 391 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 TMEM171Q8WVE6 324 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 TMEM234Q8WY98 164 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 CTHRC1Q96CG8 243 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 GPX7Q96SL4 187 aaPredicted RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 SMIM7Q9BQ49 75 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 NUDT16L1Q9BRJ7 211 aaKnown RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ST6GALNAC5Q9BVH7 336 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 DUSP23Q9BVJ7 150 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ZNF703Q9H7S9 590 aaPredicted RBP8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 HIF3AQ9Y2N7 669 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 LRP12Q9Y561 859 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 TRAPPC1Q9Y5R8 145 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 MPDZO75970 2070 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 ADAMTS9Q9P2N4 1935 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 TRAV1-1A0A0B4J248 108 aa8.2□□□□□ -1.1
CTNNA1-243ENST00000540387 LILRA5A6NI73 299 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms