RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 JMJD7P0C870 316 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 MC5RP33032 325 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 CLDN15P56746 228 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 EIF3IQ13347 325 aaKnown RBP10.77□□□□□ -0.69
USP3-203ENST00000538686 C9orf135Q5VTT2 229 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 CBLN3Q6UW01 205 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 RTN4RL2Q86UN3 420 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 RSG1Q9BU20 258 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 RAB11FIP5Q9BXF6 653 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 ZNF286AQ9HBT8 521 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 LSM7Q9UK45 103 aaKnown RBP10.77□□□□□ -0.69
USP3-203ENST00000538686 VDAC3Q9Y277 283 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 OR1A2Q9Y585 309 aa10.77□□□□□ -0.69
USP3-203ENST00000538686 IGKV1-8A0A0C4DH67 115 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 SERTM2A0A1B0GWG4 89 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 TAX1BP3O14907 124 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 SSSCA1O60232 199 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 MDH2P40926 338 aaKnown RBP10.76□□□□□ -0.69
USP3-203ENST00000538686 ID2Q02363 134 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 SP6Q3SY56 376 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 S100A7AQ86SG5 101 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 ZNF547Q8IVP9 402 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 OR4F17Q8NGA8 305 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 MRPL30Q8TCC3 161 aaKnown RBP10.76□□□□□ -0.69
USP3-203ENST00000538686 C1orf147Q96MC9 270 aaPredicted RBP10.76□□□□□ -0.69
USP3-203ENST00000538686 OR4F4Q96R69 305 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 OR6C1Q96RD1 312 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 ATP6V0BQ99437 205 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 NECAP2Q9NVZ3 263 aa10.76□□□□□ -0.69
USP3-203ENST00000538686 TRBV9A0A0B4J1U6 114 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 GRIFINA4D1Z8 144 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 C22orf46C9J442 243 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 MLNRO43193 412 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 ZNF20P17024 532 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 PRRX1P54821 245 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 ZNF765Q7L2R6 523 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 PARS2Q7L3T8 475 aaKnown RBP10.75□□□□□ -0.69
USP3-203ENST00000538686 DEFB125Q8N687 156 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 FER1L6-AS1Q8NA97 138 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 OR51T1Q8NGJ9 327 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 HOXB13Q92826 284 aaPredicted RBP10.75□□□□□ -0.69
USP3-203ENST00000538686 UHRF2Q96PU4 802 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 ZNF160Q9HCG1 818 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 PEF1Q9UBV8 284 aaKnown RBP10.75□□□□□ -0.69
USP3-203ENST00000538686 PRSS37A4D1T9 235 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 B4DGG1 531 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 LMX1BO60663 402 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 NPBWR2P48146 333 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 COL9A2Q14055 689 aaPredicted RBP10.75□□□□□ -0.69
USP3-203ENST00000538686 STUMQ69YW2 141 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 WBP2NLQ6ICG8 309 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 DEFB128Q7Z7B8 93 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 ZAR1Q86SH2 424 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 MARCH3Q86UD3 253 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 CALHM1Q8IU99 346 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 SLC39A11Q8N1S5 342 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 OR10W1Q8NGF6 305 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 SPSB1Q96BD6 273 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 PECRQ9BY49 303 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 NRN1Q9NPD7 142 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 RNF181Q9P0P0 153 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 CLEC1BQ9P126 229 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 ANXA10Q9UJ72 324 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 TBL2Q9Y4P3 447 aaKnown RBP10.75□□□□□ -0.69
USP3-203ENST00000538686 OR51B2Q9Y5P1 312 aa10.75□□□□□ -0.69
USP3-203ENST00000538686 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.74□□□□□ -0.69
USP3-203ENST00000538686 FOXI3A8MTJ6 420 aaPredicted RBP10.74□□□□□ -0.69
USP3-203ENST00000538686 CST7O76096 145 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 S1PR2O95136 353 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 MT-CO2P00403 227 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 SMIM17P0DL12 118 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 CD52P31358 61 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 THBS3P49746 956 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 ZNF726P1Q15940 193 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 AMMECR1LQ6DCA0 310 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 C12orf54Q6X4T0 127 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 GTF2H5Q6ZYL4 71 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 OR4P4Q8NGL7 312 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 OR2A1Q8NGT9 310 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 OR11L1Q8NGX0 322 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 ADAT3Q96EY9 351 aaPredicted RBP10.74□□□□□ -0.69
USP3-203ENST00000538686 BANF2Q9H503 90 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 COLQQ9Y215 455 aaPredicted RBP10.74□□□□□ -0.69
USP3-203ENST00000538686 SPTBP11277 2137 aa10.74□□□□□ -0.69
USP3-203ENST00000538686 TRAV9-2A0A087WT02 112 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 IGLV1-36A0A0B4J1U3 117 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 PIGBOS1A0A0B4J2F0 54 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 K7EQS6 105 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 TMPRSS2O15393 492 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 ONECUT2O95948 504 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 STATHP02808 62 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 WNT2P09544 360 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 OR1D2P34982 312 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 ZNF133P52736 654 aaPredicted RBP10.73□□□□□ -0.69
USP3-203ENST00000538686 OR10J3Q5JRS4 329 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 CADM4Q8NFZ8 388 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 OR5P3Q8WZ94 311 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 LHX4Q969G2 390 aa10.73□□□□□ -0.69
USP3-203ENST00000538686 NEIL1Q96FI4 390 aaPredicted RBP10.73□□□□□ -0.69
USP3-203ENST00000538686 KCNS1Q96KK3 526 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms