RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 DGAT2Q96PD7 388 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 YPEL2Q96QA6 119 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 GABRG3Q99928 467 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 NICN1Q9BSH3 213 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 TMEM222Q9H0R3 208 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 RIMS4Q9H426 269 aaPredicted RBP5.79□□□□□ -1.48
USP28-207ENST00000538475 SEMA5BQ9P283 1151 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 LRIT1Q9P2V4 623 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 TBX21Q9UL17 535 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 SLC45A2Q9UMX9 530 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 PLA2G2DQ9UNK4 145 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 FUT9Q9Y231 359 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 COA3Q9Y2R0 106 aaPredicted RBP5.79□□□□□ -1.48
USP28-207ENST00000538475 WIPI2Q9Y4P8 454 aa5.79□□□□□ -1.48
USP28-207ENST00000538475 TRBV9A0A0B4J1U6 114 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 A0A0U1RQV5 110 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 IGSF23A1L1A6 192 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 A6NCN8 305 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 H0YGG7 62 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 SDCBPO00560 298 aaPredicted RBP5.78□□□□□ -1.48
USP28-207ENST00000538475 CBR3O75828 277 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 CXCL10P02778 98 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 PCCBP05166 539 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 POU2F2P09086 479 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 VDAC1P21796 283 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 P2RY2P41231 377 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 RAB7AP51149 207 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 ARF3P61204 181 aaPredicted RBP5.78□□□□□ -1.48
USP28-207ENST00000538475 YPEL3P61236 119 aaPredicted RBP5.78□□□□□ -1.48
USP28-207ENST00000538475 UBE2V1Q13404 147 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 OR5I1Q13606 314 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 TMEM41BQ5BJD5 291 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 CST9Q5W186 159 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 C16orf82Q7Z2V1 217 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 LINC01551Q86U37 167 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 OR5C1Q8NGR4 320 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 OR1N1Q8NGS0 311 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 ZCCHC10Q8TBK6 192 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 SPPL3Q8TCT6 385 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 TMEM234Q8WY98 164 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 EXTL1Q92935 676 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 SPSB1Q96BD6 273 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 WDYHV1Q96HA8 205 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 TP53RKQ96S44 253 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 TBX15Q96SF7 602 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 RNF2Q99496 336 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 GPER1Q99527 375 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 SMIM7Q9BQ49 75 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 FAAP24Q9BTP7 215 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 VAMP8Q9BV40 100 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 OR10A5Q9H207 317 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 CALHM2Q9HA72 323 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 ZNF286AQ9HBT8 521 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 DNAJC4Q9NNZ3 241 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 SLC2A9Q9NRM0 540 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 UQCR10Q9UDW1 63 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 MRPS16Q9Y3D3 137 aaKnown RBP5.78□□□□□ -1.48
USP28-207ENST00000538475 MRPS23Q9Y3D9 190 aaKnown RBP5.78□□□□□ -1.48
USP28-207ENST00000538475 SIT1Q9Y3P8 196 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 PXMP4Q9Y6I8 212 aa5.78□□□□□ -1.48
USP28-207ENST00000538475 A0A0J9YY10 115 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 FAM24AA6NFZ4 105 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 FRG2CA6NGY1 282 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 RNF212BA8MTL3 300 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 ZNF705FA8MVS1 300 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 ALG1L2C9J202 215 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 PROB1E7EW31 1015 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 NPIPA5E9PKD4 350 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 MPPED1O15442 326 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 WDR1O75083 606 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 UTS2O95399 124 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 DIRAS3O95661 229 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 IGLV3-1P01715 115 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 STATHP02808 62 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 ZNF705DP0CH99 300 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 ZNF705BP0CI00 300 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 HNF1AP20823 631 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 AADACP22760 399 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 S100GP29377 79 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 CHRNB4P30926 498 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 APOBEC3AP31941 199 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 RPS27P42677 84 aaKnown RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 PSMB3P49720 205 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 BLKP51451 505 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 DYNLT3P51808 116 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 PTTG1IPP53801 180 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 ELLP55199 621 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 SUMO3P55854 103 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 RPL15P61313 204 aaKnown RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 HERV-K104P61576 105 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 RPL23P62829 140 aaKnown RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 RPS21P63220 83 aaKnown RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 HBG1P69891 147 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 HBG2P69892 147 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 MEF2BQ02080 365 aaPredicted RBP5.77□□□□□ -1.49
USP28-207ENST00000538475 ID2Q02363 134 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 Q0VG73 95 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 KISS1Q15726 138 aa5.77□□□□□ -1.49
USP28-207ENST00000538475 CD226Q15762 336 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms