RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SOD3P08294 240 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CST2P09228 141 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CT62P0C5K7 136 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 THEGLP0DJG4 465 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CEACAM1P13688 526 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ST6GAL1P15907 406 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 BCKDHBP21953 392 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 DTYMKP23919 212 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 LMO1P25800 156 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 IL12BP29460 328 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 OR10J1P30954 320 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CD200P41217 278 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CEBPGP53567 150 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 HSD17B7P56937 341 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 FAM3BP58499 235 aaPredicted RBP5.68□□□□□ -1.5
USP28-202ENST00000535607 RND3P61587 244 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 HIST1H3AP68431 136 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CFHR3Q02985 330 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 FUT7Q11130 342 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ZP4Q12836 540 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 COTL1Q14019 142 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 TGIF1Q15583 401 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 PCK2Q16822 640 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ACSF3Q4G176 576 aaPredicted RBP5.68□□□□□ -1.5
USP28-202ENST00000535607 COA6Q5JTJ3 125 aaKnown RBP5.68□□□□□ -1.5
USP28-202ENST00000535607 TMEM31Q5JXX7 168 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 DCAF10Q5QP82 559 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 LCE4AQ5TA78 99 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 AADACL3Q5VUY0 350 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 FAM90A2PQ658T7 463 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 LCN10Q6JVE6 187 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 SLC25A24Q6NUK1 477 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 PLXDC2Q6UX71 529 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 Q6ZSR6 202 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 SLC22A18ASQ8N1D0 253 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 Q8N1X5 172 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 GPR137CQ8N3F9 429 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 FAM89BQ8N5H3 189 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 SLC38A9Q8NBW4 561 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ADPRHL1Q8NDY3 354 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 SEMA6DQ8NFY4 1073 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 OR52N4Q8NGI2 321 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 SCGB1C1Q8TD33 95 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ROBO4Q8WZ75 1007 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 C10orf35Q96D05 121 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 AMELYQ99218 206 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 PBOV1Q9GZY1 135 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 FGF22Q9HCT0 170 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 DECR2Q9NUI1 292 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 CISD1Q9NZ45 108 aaKnown RBP5.68□□□□□ -1.5
USP28-202ENST00000535607 OR14J1Q9UGF5 321 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 ZDBF2Q9HCK1 2354 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 NUMA1Q14980 2115 aa5.68□□□□□ -1.5
USP28-202ENST00000535607 A0A087WV48 116 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 A0A1W2PR77 199 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 XKRY2A2RUG3 117 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 FRG2CA6NGY1 282 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 KRTAP9-7A8MTY7 169 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 ZNF732B4DXR9 585 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PLPP3O14495 311 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 NUDT14O95848 222 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 MT-CO3P00414 261 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 CXCL1P09341 107 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 SP9P0CG40 484 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 GZMBP10144 247 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 COX5BP10606 129 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 RPS2P15880 293 aaKnown RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 BLVRBP30043 206 aaPredicted RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 GUCA1AP43080 201 aaPredicted RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 GABRA4P48169 554 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PIGPP57054 158 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 HERV-K104P61576 105 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 HNRNPKP61978 463 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP28-202ENST00000535607 GRB2P62993 217 aaKnown RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 IGLV3-21P80748 117 aaPredicted RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 EWSR1Q01844 656 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP28-202ENST00000535607 IL24Q13007 206 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PRDX4Q13162 271 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 ASPHD2Q6ICH7 369 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 ACSM6Q6P461 480 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 NPSR1Q6W5P4 371 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 LANCL3Q6ZV70 420 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 GRINAQ7Z429 371 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 CMTM1Q8IZ96 169 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 SLC35G3Q8N808 338 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 OR4C3Q8NH37 302 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 OR10G6Q8NH81 332 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PP6455Q8WZ26 134 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 OR1E3Q8WZA6 343 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 FRZBQ92765 325 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 SLAMF6Q96DU3 332 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 ARHGAP5-AS1Q96IT6 56 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 WFIKKN1Q96NZ8 548 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 ZNF2Q9BSG1 426 aaPredicted RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 NICN1Q9BSH3 213 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PECRQ9BY49 303 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 PARP12Q9H0J9 701 aaKnown RBP5.67□□□□□ -1.5
USP28-202ENST00000535607 PLK3Q9H4B4 646 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 SAP30LQ9HAJ7 183 aa5.67□□□□□ -1.5
USP28-202ENST00000535607 CDH20Q9HBT6 801 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms