RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CCNOP22674 350 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 FGF12P61328 243 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 FOXO1Q12778 655 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 RHEBQ15382 184 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 SRSF7Q16629 238 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS28-213ENST00000530983 OR2B11Q5JQS5 317 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 ODF3L1Q8IXM7 274 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 TMEM252Q8N6L7 170 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 CD300LFQ8TDQ1 290 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 ABHD14AQ9BUJ0 271 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 TNRC6AQ8NDV7 1962 aaKnown RBP16.51■□□□□ 0.23
VPS28-213ENST00000530983 SLC22A20A6NK97 555 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 PROB1E7EW31 1015 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 MRPL33O75394 65 aaKnown RBP16.51■□□□□ 0.23
VPS28-213ENST00000530983 CYB561P49447 251 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 CCL20P78556 96 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 ARF1P84077 181 aaKnown RBP16.51■□□□□ 0.23
VPS28-213ENST00000530983 C9orf135Q5VTT2 229 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 ZNF565Q8N9K5 539 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 OR1J1Q8NGS3 322 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 OR2G3Q8NGZ4 309 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 SPIN2AQ99865 258 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 SPIN2BQ9BPZ2 258 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 PLEKHF2Q9H8W4 249 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 GLRX2Q9NS18 164 aa16.51■□□□□ 0.23
VPS28-213ENST00000530983 A0A096LPE4 126 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 A0A1W2PPZ6 126 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 WRBO00258 174 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 TMEM50AO95807 157 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 NMSQ5H8A3 153 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 SIGLEC12Q96PQ1 595 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 PRDM6Q9NQX0 595 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 RYDENQ9NUL5 291 aaKnown RBP16.5■□□□□ 0.23
VPS28-213ENST00000530983 MTCH1Q9NZJ7 389 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 DMRT1Q9Y5R6 373 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 IGKV3D-15A0A087WSY6 115 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 IGKV1-6A0A0C4DH72 117 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 CLEC18AA5D8T8 446 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 ZNF729A6NN14 1252 aaPredicted RBP16.5■□□□□ 0.23
VPS28-213ENST00000530983 CDRT15L2A8MXV6 281 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 HSPB6O14558 160 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 TUSC2O75896 110 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 MAS1LP35410 378 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 C9orf152Q5JTZ5 239 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 PEAR1Q5VY43 1037 aaPredicted RBP16.5■□□□□ 0.23
VPS28-213ENST00000530983 ZFP62Q8NB50 900 aaPredicted RBP16.5■□□□□ 0.23
VPS28-213ENST00000530983 CLEC18CQ8NCF0 446 aa16.5■□□□□ 0.23
VPS28-213ENST00000530983 ZNF503-AS2A6NEH8 195 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 HLA-HP01893 362 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 CEACAM21Q3KPI0 293 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 SPSB3Q6PJ21 355 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 SAXO1Q8IYX7 474 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 OR5C1Q8NGR4 320 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 PLPPR1Q8TBJ4 325 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 CELSR3Q9NYQ7 3312 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 ZNF407Q9C0G0 2248 aa16.49■□□□□ 0.23
VPS28-213ENST00000530983 C5orf49A4QMS7 147 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 CER1O95813 267 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 TDGF1P13385 188 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 UCP1P25874 307 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 FOXG1P55316 489 aaPredicted RBP16.48■□□□□ 0.23
VPS28-213ENST00000530983 PSMF1Q92530 271 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 ABHD14BQ96IU4 210 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 PRRG4Q9BZD6 226 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 SLC25A31Q9H0C2 315 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 TOLLIPQ9H0E2 274 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 CCL28Q9NRJ3 127 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 COL27A1Q8IZC6 1860 aaPredicted RBP16.48■□□□□ 0.23
VPS28-213ENST00000530983 HSD17B6O14756 317 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 RAB2AP61019 212 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 ID3Q02535 119 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 SPINK14Q6IE38 97 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 ZDHHC23Q8IYP9 409 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 LINC00470Q9BZP3 86 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 SMDT1Q9H4I9 107 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 MUC3AQ02505 3323 aa16.48■□□□□ 0.23
VPS28-213ENST00000530983 ZNF732B4DXR9 585 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 CST7O76096 145 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 YIF1AO95070 293 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 SERPINA7P05543 415 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 EPHA1P21709 976 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 VDAC1P21796 283 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 SRYQ05066 204 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 MPV17LQ2QL34 196 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 MRPL21Q7Z2W9 205 aaKnown RBP16.47■□□□□ 0.23
VPS28-213ENST00000530983 TIPARPQ7Z3E1 657 aaKnown RBP16.47■□□□□ 0.23
VPS28-213ENST00000530983 CT55Q8WUE5 264 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 ATP23Q9Y6H3 246 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 DUXBA0A1W2PPF3 345 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 RBFOX3A6NFN3 312 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 IFITM10A6NMD0 228 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 B4E171 279 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 TSPAN7P41732 249 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 DYNLT3P51808 116 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 VAMP2P63027 116 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 SOHLH1Q5JUK2 328 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 DCAF12Q5T6F0 453 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 C1QL4Q86Z23 238 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 SUMF2Q8NBJ7 301 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 OR8G5Q8NG78 346 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms