RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 BAGE2Q86Y30 109 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 M1APQ8TC57 530 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 BSCL2Q96G97 398 aaPredicted RBP10.21□□□□□ -0.77
SYNPO-204ENST00000519664 FAHD2AQ96GK7 314 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 BTF3L4Q96K17 158 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 HES7Q9BYE0 225 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 TAAR3PQ9P1P4 343 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 STARD10Q9Y365 291 aa10.21□□□□□ -0.77
SYNPO-204ENST00000519664 PRRG2O14669 202 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 OR2A2Q6IF42 318 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF429Q86V71 674 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 S1PR3Q99500 378 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 OR2D2Q9H210 308 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 LAMP3Q9UQV4 416 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 SPG11Q96JI7 2443 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 ELOA3CA0A087WX78 387 aaPredicted RBP10.21□□□□□ -0.78
SYNPO-204ENST00000519664 DVL1O14640 695 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 GNG10P50151 68 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 ZP1P60852 638 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 IGLV3-21P80748 117 aaPredicted RBP10.21□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF154Q13106 437 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 SMIM21Q3B7S5 101 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 OR13G1Q8NGZ3 307 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF426Q9BUY5 554 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 G6PC2Q9NQR9 355 aa10.21□□□□□ -0.78
SYNPO-204ENST00000519664 A0A1B0GV90 55 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 PPP1CBP62140 327 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 PMS2CLQ68D20 193 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 LIAT1Q6ZQX7 453 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 FLVCR1-AS1Q8TAF5 88 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 ALX4Q9H161 411 aaPredicted RBP10.2□□□□□ -0.78
SYNPO-204ENST00000519664 SLC25A22Q9H936 323 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 LIPGQ9Y5X9 500 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 POMT1Q9Y6A1 747 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 A0A1W2PPH5 198 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 CD1AP06126 327 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 ZP4Q12836 540 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 RNPS1Q15287 305 aaKnown RBP10.2□□□□□ -0.78
SYNPO-204ENST00000519664 C1QL2Q7Z5L3 287 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 LDLRAD3Q86YD5 345 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 OR1K1Q8NGR3 316 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 FBXO17Q96EF6 278 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 DAZAP1Q96EP5 407 aaKnown RBP10.2□□□□□ -0.78
SYNPO-204ENST00000519664 SAT2Q96F10 170 aaPredicted RBP10.2□□□□□ -0.78
SYNPO-204ENST00000519664 USF3Q68DE3 2245 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 hCG_1809904A0A1W2PP81 198 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 A0A1W2PR64 198 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 A0A1W2PRV1 198 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 PMS2P1A4D2B8 440 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 HPP00738 406 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 OR5G3P0C626 314 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 SELEP16581 610 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 COX5AP20674 150 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 DYNLT3P51808 116 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 GAS1P54826 345 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 DCAF10Q5QP82 559 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 FAM27BQ5VT28 67 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 ARL6IP6Q8N6S5 226 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF355PQ9NSJ1 428 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 FAM206AQ9NX38 181 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 MTCH1Q9NZJ7 389 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 LPAR3Q9UBY5 353 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 KCNMB2Q9Y691 235 aa10.2□□□□□ -0.78
SYNPO-204ENST00000519664 SPAARA0A1B0GVQ0 90 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 TMEM30CPA0ZSE6 113 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 LRRC30A6NM36 301 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 GNB1P62873 340 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 UBE2V2Q15819 145 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 HOGA1Q86XE5 327 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 TXN2Q99757 166 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 SF3B5Q9BWJ5 86 aaKnown RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 NMES1Q9C002 83 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 NGBQ9NPG2 151 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 TRAV17A0A0B4J275 112 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF729A6NN14 1252 aaPredicted RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 TRIP6Q15654 476 aaKnown RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 MRGPRFQ96AM1 343 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 POM121Q96HA1 1249 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 OR10C1Q96KK4 312 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 GDF15Q99988 308 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 ACTR3CQ9C0K3 210 aaPredicted RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 HEATR1Q9H583 2144 aaKnown RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 FANCMQ8IYD8 2048 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 DNASE2O00115 360 aaPredicted RBP10.19□□□□□ -0.78
SYNPO-204ENST00000519664 CNIH1O95406 144 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 CST2P09228 141 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 KLK2P20151 261 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 RUNX1Q01196 453 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 IQCJQ1A5X6 159 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 LYG1Q8N1E2 194 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 TMEM37Q8WXS4 190 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 LINC01387J3KSC0 135 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 FBP1P09467 338 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 PRF1P14222 555 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 ID4P47928 161 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 RBPJQ06330 500 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 MPV17LQ2QL34 196 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 C1orf100Q5SVJ3 147 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 OR10X1Q8NGY0 326 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 SAP25Q8TEE9 199 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms