RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 GFRA1P56159 465 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 RND3P61587 244 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 ZNF154Q13106 437 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 ZNF266Q14584 549 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 NMSQ5H8A3 153 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 COLCA1Q6ZS62 124 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 SUMF2Q8NBJ7 301 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 REPIN1Q9BWE0 567 aaKnown RBP11.15□□□□□ -0.62
PTPN7-217ENST00000495688 PRDM14Q9GZV8 571 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 PLEKHF2Q9H8W4 249 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 TCFL5Q9UL49 500 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 LIPGQ9Y5X9 500 aa11.15□□□□□ -0.62
PTPN7-217ENST00000495688 TNRC6BQ9UPQ9 1833 aaKnown RBP11.15□□□□□ -0.63
PTPN7-217ENST00000495688 A0A0G2JRQ6 117 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 ZNF732B4DXR9 585 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 CHST1O43916 411 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 LILRA1O75019 489 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 PITX3O75364 302 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 OR8U8P0C7N1 319 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 FOXO1Q12778 655 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 PLPPR1Q8TBJ4 325 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 HES7Q9BYE0 225 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 OR51B6Q9H340 312 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 SMOC1Q9H4F8 434 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 CALHM2Q9HA72 323 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 KIAA2026Q5HYC2 2103 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 RBFOX3A6NFN3 312 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 LINC00587B1AMM8 73 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 FGF12P61328 243 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 VAMP2P63027 116 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 RHEBQ15382 184 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 TIPARPQ7Z3E1 657 aaKnown RBP11.14□□□□□ -0.63
PTPN7-217ENST00000495688 TUSC5Q8IXB3 177 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 C17orf78Q8N4C9 275 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 CPNE4Q96A23 557 aaPredicted RBP11.14□□□□□ -0.63
PTPN7-217ENST00000495688 MMP24Q9Y5R2 645 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 MED12LQ86YW9 2145 aa11.14□□□□□ -0.63
PTPN7-217ENST00000495688 H0YL77 283 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 HS3ST1O14792 307 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 IGHV2-5P01817 119 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 CYB561P49447 251 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 WDR5BQ86VZ2 330 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 Q8NFD4 153 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 NIT2Q9NQR4 276 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 FAM86C1Q9NVL1 165 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 TXNL1O43396 289 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 OR2C1O95371 312 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 SRPXP78539 464 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 ID3Q02535 119 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 NCMAPQ5T1S8 102 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 ZNF343Q6P1L6 599 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 P4HA3Q7Z4N8 544 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 FAM185AQ8N0U4 392 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 KDF1Q8NAX2 398 aaPredicted RBP11.13□□□□□ -0.63
PTPN7-217ENST00000495688 OR51H1Q8NH63 302 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 PSMF1Q92530 271 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 RDH5Q92781 318 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 TAAR3PQ9P1P4 343 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 MED13Q9UHV7 2174 aa11.13□□□□□ -0.63
PTPN7-217ENST00000495688 TRAV39A0A0B4J263 110 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 H3BQ15 152 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 TUSC2O75896 110 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 VDAC1P21796 283 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 PAX9P55771 341 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 MRPL21Q7Z2W9 205 aaKnown RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 IL22RA1Q8N6P7 574 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 LFNGQ8NES3 379 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 TECTBQ96PL2 329 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 BOD1L1Q8NFC6 3051 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 ARGFXA6NJG6 315 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 PGLYRP1O75594 196 aaPredicted RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 UCP1P25874 307 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 CEACAM21Q3KPI0 293 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 PCSK4Q6UW60 755 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 MYPOPQ86VE0 399 aaPredicted RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 ZDHHC23Q8IYP9 409 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 CYB561D1Q8N8Q1 229 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 RAB39BQ96DA2 213 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 SPIN2AQ99865 258 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 SPIN2BQ9BPZ2 258 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 LRFN1Q9P244 771 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 METTL1Q9UBP6 276 aaKnown RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 URGCP-MRPS24S4R325 110 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 TRAPPC2LH3BP13 241 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 CLN5O75503 358 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 S100A9P06702 114 aaKnown RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 SMIM6P0DI80 62 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 PMELP40967 661 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 TRA2AQ13595 282 aaKnown RBP eCLIP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 Q6ZS49 121 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 TMEM105Q8N8V8 129 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 UBALD1Q8TB05 177 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 CT55Q8WUE5 264 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 YPEL4Q96NS1 127 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 SLC25A31Q9H0C2 315 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 SEBOXQ9HB31 216 aaPredicted RBP11.12□□□□□ -0.63
PTPN7-217ENST00000495688 GSN-AS1Q9NRJ2 163 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 RNF115Q9Y4L5 304 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 ATP23Q9Y6H3 246 aa11.12□□□□□ -0.63
PTPN7-217ENST00000495688 FABP1P07148 127 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms