RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 STX19Q8N4C7 294 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 PARP16Q8N5Y8 322 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 LINC00482Q8N8I6 264 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 KLHL30-AS1Q8NEE0 82 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 CNIH3Q8TBE1 160 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 TNFAIP8L1Q8WVP5 186 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 PELI1Q96FA3 418 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 COQ2Q96H96 371 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 SPACA5Q96QH8 159 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 JAM3Q9BX67 310 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 KIF25Q9UIL4 384 aa9.2□□□□□ -0.94
COL6A3-213ENST00000493475 SIRT4Q9Y6E7 314 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-213ENST00000493475 OR4C45A6NMZ5 311 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 NCBP2LA6PVI3 153 aaKnown RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 CCRL2O00421 344 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 TXNL1O43396 289 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 ZNF780AO75290 641 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 IGKV1D-33P01593 117 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 IGKV1-33P01594 117 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 NHLRC4P0CG21 123 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 POLR2IP36954 125 aaKnown RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 THBS3P49746 956 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 GNG10P50151 68 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 NANOS3P60323 173 aaKnown RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 PAX5Q02548 391 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 RAB40BQ12829 278 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 C17orf58Q2M2W7 97 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 KLHL22Q53GT1 634 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 CXorf66Q5JRM2 361 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 ZFP1Q6P2D0 407 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 Q6P435 159 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 OR2W3Q7Z3T1 314 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 MOB3BQ86TA1 216 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 ZNF695Q8IW36 515 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 MRPL41Q8IXM3 137 aaKnown RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 DRAM1Q8N682 238 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 C5orf56Q8N8D9 126 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 OR8H1Q8NGG4 311 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 OR51A4Q8NGJ6 313 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 OR2T10Q8NGZ9 312 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 OR8U1Q8NH10 309 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 NEK7Q8TDX7 302 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 WWC2-AS2Q96NR7 200 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 B9D2Q9BPU9 175 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 METTL9Q9H1A3 318 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 CKLFQ9UBR5 152 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 EXOGQ9Y2C4 368 aaKnown RBP9.19□□□□□ -0.94
COL6A3-213ENST00000493475 GMPPBQ9Y5P6 360 aa9.19□□□□□ -0.94
COL6A3-213ENST00000493475 TMEM30CPA0ZSE6 113 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A18PA6NE21 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A16PA6NEW6 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A20PA6NIJ5 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A9PA6NNJ1 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A12PA8MX19 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A5PA8MXJ8 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 HSD17B6O14756 317 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 OR7C1O76099 320 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-213ENST00000493475 AMY1AP04745 511 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 AMY2AP04746 511 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A15PP0C7V4 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A13PP0C7W8 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A14PP0C7W9 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 FAM90A24PP0C7X0 464 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 OR5H8P0DN80 308 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 HOXD3P31249 432 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-213ENST00000493475 ALDH3A2P51648 485 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 RAB25P57735 213 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 MED21Q13503 144 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 GPR176Q14439 515 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 HNF4GQ14541 408 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 CDK5R1Q15078 307 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 LTC4SQ16873 150 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 PNLIPRP3Q17RR3 467 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 TMEM30BQ3MIR4 351 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 BAIAP2L2Q6UXY1 529 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 ZNF329Q86UD4 541 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 TGIF2LXQ8IUE1 241 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 OR5M8Q8NGP6 311 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 MRGPRDQ8TDS7 321 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 GPR148Q8TDV2 347 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 RASL11BQ9BPW5 248 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 PPIL3Q9H2H8 161 aaKnown RBP9.18□□□□□ -0.94
COL6A3-213ENST00000493475 LINC00574Q9H8X3 128 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 SPACA1Q9HBV2 294 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 LIN7CQ9NUP9 197 aaKnown RBP9.18□□□□□ -0.94
COL6A3-213ENST00000493475 PSG11Q9UQ72 335 aa9.18□□□□□ -0.94
COL6A3-213ENST00000493475 RPL36Q9Y3U8 105 aaKnown RBP9.18□□□□□ -0.94
COL6A3-213ENST00000493475 TENM3Q9P273 2699 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 IRGMA1A4Y4 181 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 SH2D7A6NKC9 451 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-213ENST00000493475 NPIPB11E5RHQ5 1161 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 J3QRE1 110 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 SDCBPO00560 298 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-213ENST00000493475 EI24O14681 340 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 ZFPL1O95159 310 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 HTR3BO95264 441 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 IGHG2P01859 326 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 ALPLP05186 524 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 VDAC1P21796 283 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 GDNFP39905 211 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms