RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TAAR9Q96RI9 348 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 C12orf57Q99622 126 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 FOXJ2Q9P0K8 574 aa15.36■□□□□ 0.05
VIM-206ENST00000487938 DOCK7Q96N67 2140 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 UMAD1C9J7I0 102 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 ITGA3P26006 1051 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 VAMP2P63027 116 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 CCL20P78556 96 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 OR1C1Q15619 314 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 Q6ZS49 121 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 C17orf78Q8N4C9 275 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 TMEM217Q8N7C4 229 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 RDH5Q92781 318 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 HIST1H2BAQ96A08 127 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 TTTY12Q9BZ98 90 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 PLEKHF2Q9H8W4 249 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 ATPIF1Q9UII2 106 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 R4GN57 208 aa15.35■□□□□ 0.05
VIM-206ENST00000487938 CDRT15L2A8MXV6 281 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 LINC01387J3KSC0 135 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 K7N7A8 449 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 NUFIP2Q7Z417 695 aaKnown RBP15.34■□□□□ 0.05
VIM-206ENST00000487938 SAXO1Q8IYX7 474 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 TMEM252Q8N6L7 170 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 SUMF2Q8NBJ7 301 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 GLRX2Q9NS18 164 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 COA4Q9NYJ1 87 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 B4GALT7Q9UBV7 327 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 DNAJC13O75165 2243 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 ZDBF2Q9HCK1 2354 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 AHCTF1Q8WYP5 2266 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 CD300LBA8K4G0 201 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 TMEM50AO95807 157 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 LMO1P25800 156 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 SNRPEP62304 92 aaKnown RBP15.34■□□□□ 0.05
VIM-206ENST00000487938 KRBOX4Q5JUW0 171 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 ODF3L1Q8IXM7 274 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 OR5C1Q8NGR4 320 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 APH1AQ96BI3 265 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 POM121Q96HA1 1249 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 POM121L2Q96KW2 1035 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 STRADBQ9C0K7 418 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 ATP23Q9Y6H3 246 aa15.34■□□□□ 0.05
VIM-206ENST00000487938 TUSC2O75896 110 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 DYNLT3P51808 116 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 RAB5BP61020 215 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 RND3P61587 244 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 TMEM251Q8N6I4 163 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 OR5A2Q8NGI9 324 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 SFT2D1Q8WV19 159 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 SPIN2AQ99865 258 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 SPIN2BQ9BPZ2 258 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 SPRY4Q9C004 299 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 SLC35B3Q9H1N7 401 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 RNF122Q9H9V4 155 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 KCNJ16Q9NPI9 418 aa15.33■□□□□ 0.05
VIM-206ENST00000487938 LYRM2Q9NU23 88 aaPredicted RBP15.33■□□□□ 0.05
VIM-206ENST00000487938 COL27A1Q8IZC6 1860 aaPredicted RBP15.33■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PPH5 198 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 CHST1O43916 411 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 ARG1P05089 322 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 PLGLB1Q02325 96 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 SRSF7Q16629 238 aaKnown RBP eCLIP15.33■□□□□ 0.04
VIM-206ENST00000487938 MPV17LQ2QL34 196 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 NMSQ5H8A3 153 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 PLPPR1Q8TBJ4 325 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 PBDC1Q9BVG4 233 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 C12orf49Q9H741 205 aa15.33■□□□□ 0.04
VIM-206ENST00000487938 KIR2DS1A0A191URI9 304 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 A6NLC8 198 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 PITX3O75364 302 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 PGLYRP1O75594 196 aaPredicted RBP15.32■□□□□ 0.04
VIM-206ENST00000487938 PTAFRP25105 342 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 KIR2DS4P43632 304 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 ZNF266Q14584 549 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 KIR2DS1Q14954 304 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 HIKESHIQ53FT3 197 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 VASH2Q86V25 355 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 MRPL30Q8TCC3 161 aaKnown RBP15.32■□□□□ 0.04
VIM-206ENST00000487938 OR5P3Q8WZ94 311 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 EGLN1Q9GZT9 426 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 SLC25A31Q9H0C2 315 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 PRSS50Q9UI38 385 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 TRAV39A0A0B4J263 110 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PNU3 283 aaPredicted RBP15.32■□□□□ 0.04
VIM-206ENST00000487938 C1orf196B1AJZ1 125 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 SLC34A2O95436 690 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 COX5BP10606 129 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 FOLR2P14207 255 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 EPHA1P21709 976 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 VDAC1P21796 283 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 UCP1P25874 307 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 ID3Q02535 119 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 PLP2Q04941 152 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 PCSK4Q6UW60 755 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 CMTM1Q8IZ96 169 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 IL22RA1Q8N6P7 574 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 ZPBPQ9BS86 351 aa15.32■□□□□ 0.04
VIM-206ENST00000487938 RYDENQ9NUL5 291 aaKnown RBP15.32■□□□□ 0.04
VIM-206ENST00000487938 SS18L1O75177 396 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms