RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 PAX5Q02548 391 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 SPHARQ15513 63 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 MPV17LQ2QL34 196 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 ATAD3CQ5T2N8 411 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 GLIPR1L1Q6UWM5 242 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 CDH26Q8IXH8 852 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 DTX3Q8N9I9 347 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 MRGPRDQ8TDS7 321 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 OR5M11Q96RB7 305 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 TPRKBQ9Y3C4 175 aa16.46■□□□□ 0.23
HDAC4-209ENST00000487617 MGAM2Q2M2H8 2515 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 A0A087X0M5 115 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 A0A1B0GX30 115 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 MEGF11A6BM72 1044 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 LEUTXA8MZ59 168 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 M0QZ24 198 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 IGLV1-47P01700 117 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 MYF6P23409 242 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 EFNB2P52799 333 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 MED22Q15528 200 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 AWAT2Q6E213 333 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 KIRREL1Q96J84 757 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 TMED9Q9BVK6 235 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 IDI2-AS1Q9NZ38 188 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 LSM2Q9Y333 95 aaKnown RBP16.45■□□□□ 0.22
HDAC4-209ENST00000487617 KIAA2026Q5HYC2 2103 aa16.45■□□□□ 0.22
HDAC4-209ENST00000487617 TRAV39A0A0B4J263 110 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 H0YHG0 523 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 IL1AP01583 271 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 CEACAM3P40198 252 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 SLC35A2P78381 396 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 RBM39Q14498 530 aaKnown RBP16.44■□□□□ 0.22
HDAC4-209ENST00000487617 INSL4Q14641 139 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 LTC4SQ16873 150 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 HLA-DRB5Q30154 266 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 ACSM3Q53FZ2 586 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 UTF1Q5T230 341 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 C11orf88Q6PI97 169 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 MS4A15Q8N5U1 240 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 NKAIN3Q8N8D7 197 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 NEK7Q8TDX7 302 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 CREB3L1Q96BA8 519 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 ANKRD60Q9BZ19 345 aa16.44■□□□□ 0.22
HDAC4-209ENST00000487617 TMEM30CPA0ZSE6 113 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 BUB1B-PAK6H3BSN5 160 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 H3BUI4 141 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 ARHGDIBP52566 201 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 IRF3Q14653 427 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 OR9G1Q8NH87 305 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 RFESDQ8TAC1 157 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 MRPS24Q96EL2 167 aaKnown RBP16.43■□□□□ 0.22
HDAC4-209ENST00000487617 LINC00574Q9H8X3 128 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 ZNF702PQ9H963 129 aa16.43■□□□□ 0.22
HDAC4-209ENST00000487617 FAM90A22PA8MWA6 464 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 NPIPB11E5RHQ5 1161 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 IGHV3-7P01780 117 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 BRS3P32247 399 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 SSTR5P35346 364 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 TPTE2P1Q5T6R2 138 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 UNQ9370/PRO34162Q6UXP9 181 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 IZUMO2Q6UXV1 221 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 LYPD6Q86Y78 171 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 KLHDC1Q8N7A1 406 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 LEAP2Q969E1 77 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 UQCC2Q9BRT2 126 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 MMP28Q9H239 520 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 BANF2Q9H503 90 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 DUSP21Q9H596 190 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 SPACA1Q9HBV2 294 aa16.42■□□□□ 0.22
HDAC4-209ENST00000487617 RGS10O43665 173 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 CRTAPO75718 401 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-209ENST00000487617 VSIG10L2P0DP72 767 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 GZMHP20718 246 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 CD24P25063 80 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 HSPA13P48723 471 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 HABP2Q14520 560 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-209ENST00000487617 HERPUD1Q15011 391 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 FAM27D1Q5T7N8 215 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 Q6ZTK2 550 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 CCDC107Q8WV48 283 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 UFD1Q92890 307 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 SELENOIQ9C0D9 397 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 PRSS22Q9GZN4 317 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 CCDC90BQ9GZT6 254 aa16.41■□□□□ 0.22
HDAC4-209ENST00000487617 AMMECR1Q9Y4X0 333 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-209ENST00000487617 MCRIP1C9JLW8 97 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 LY6LH3BQJ8 138 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 J3QR06 171 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 MGMTP16455 207 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 GP2P55259 537 aaKnown RBP16.4■□□□□ 0.22
HDAC4-209ENST00000487617 GPR50Q13585 617 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 RBM48Q5RL73 367 aaKnown RBP16.4■□□□□ 0.22
HDAC4-209ENST00000487617 LIPKQ5VXJ0 399 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 CEACAM19Q7Z692 300 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 Q8N2B8 174 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 TMEM104Q8NE00 496 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 OR10A7Q8NGE5 316 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 RCC2Q9P258 522 aaKnown RBP16.4■□□□□ 0.22
HDAC4-209ENST00000487617 PSG11Q9UQ72 335 aa16.4■□□□□ 0.22
HDAC4-209ENST00000487617 OOSP1A8MZH6 123 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms