RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ST8SIA4Q92187 359 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 TRIM63Q969Q1 353 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 DACT3Q96B18 629 aaPredicted RBP14.11□□□□□ -0.15
VIM-205ENST00000485947 THAP7Q9BT49 309 aaPredicted RBP14.11□□□□□ -0.15
VIM-205ENST00000485947 CLN8Q9UBY8 286 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 NUP50Q9UKX7 468 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 KIR2DS1A0A191URI9 304 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 TMEM235A6NFC5 223 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 SH2D1BO14796 132 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 VENTXO95231 258 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 LPLP06858 475 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 LIPFP07098 398 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 GNB3P16520 340 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 INPP1P49441 399 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 SNU13P55769 128 aaKnown RBP14.1□□□□□ -0.15
VIM-205ENST00000485947 GNG2P59768 71 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 BPIFB3P59826 476 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 SEC61A1P61619 476 aaKnown RBP14.1□□□□□ -0.15
VIM-205ENST00000485947 IKZF1Q13422 519 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 LYSMD2Q8IV50 215 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 C19orf18Q8NEA5 215 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 OR52I2Q8NH67 350 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 ZMAT3Q9HA38 289 aaKnown RBP14.1□□□□□ -0.15
VIM-205ENST00000485947 IL36RNQ9UBH0 155 aa14.1□□□□□ -0.15
VIM-205ENST00000485947 RBMX2Q9Y388 322 aaKnown RBP14.1□□□□□ -0.15
VIM-205ENST00000485947 IGHV2-70DA0A0C4DH43 119 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 RBBP9O75884 186 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 EGR1P18146 543 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 CBX5P45973 191 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 ACTBP60709 375 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 ACTG1P63261 375 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 NKAPLQ5M9Q1 402 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 ATAD3CQ5T2N8 411 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 WDR25Q64LD2 544 aaPredicted RBP14.09□□□□□ -0.15
VIM-205ENST00000485947 STEAP3Q658P3 488 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 Q6P435 159 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 RBMS3Q6XE24 437 aaKnown RBP14.09□□□□□ -0.15
VIM-205ENST00000485947 C6orf201Q7Z4U5 140 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 SETD6Q8TBK2 473 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 DEDD2Q8WXF8 326 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 GCDHQ92947 438 aaPredicted RBP14.09□□□□□ -0.15
VIM-205ENST00000485947 UPRTQ96BW1 309 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 SEH1LQ96EE3 360 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 DMRTB1Q96MA1 342 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 TAS2R8Q9NYW2 309 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 NLKQ9UBE8 527 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 DNAJB11Q9UBS4 358 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 MTFP1Q9UDX5 166 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 KCNK7Q9Y2U2 307 aa14.09□□□□□ -0.15
VIM-205ENST00000485947 A0A1W2PQ09 198 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 OOEPA6NGQ2 149 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 TNFRSF13BO14836 293 aaPredicted RBP14.08□□□□□ -0.16
VIM-205ENST00000485947 DEGS1O15121 323 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 ECDO95905 644 aaPredicted RBP14.08□□□□□ -0.16
VIM-205ENST00000485947 HAND1O96004 215 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 CD3GP09693 182 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 GSTT2BP0CG30 244 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 PTHLHP12272 177 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 ZNF44P15621 663 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 MUC1P15941 1255 aaPredicted RBP14.08□□□□□ -0.16
VIM-205ENST00000485947 CD80P33681 288 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 GDNFP39905 211 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 DEFA1P59665 94 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 DEFA3P59666 94 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 AP3S2P59780 193 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 IFITM3Q01628 133 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 ARFRP1Q13795 201 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 RBM39Q14498 530 aaKnown RBP14.08□□□□□ -0.16
VIM-205ENST00000485947 TEX36Q5VZQ5 186 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 C9orf139Q6ZV77 190 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 WDR13Q9H1Z4 485 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 KAAG1Q9UBP8 84 aa14.08□□□□□ -0.16
VIM-205ENST00000485947 ZNF107Q9UII5 783 aaPredicted RBP14.08□□□□□ -0.16
VIM-205ENST00000485947 MEIOCA2RUB1 952 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 MCRIP1C9JLW8 97 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.07□□□□□ -0.16
VIM-205ENST00000485947 ENSAO43768 121 aaKnown RBP14.07□□□□□ -0.16
VIM-205ENST00000485947 ZNF205O95201 554 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 OR2H2O95918 312 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 LMO1P25800 156 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 RCVRNP35243 200 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 COMPP49747 757 aaPredicted RBP14.07□□□□□ -0.16
VIM-205ENST00000485947 GMFBP60983 142 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 MRPS15P82914 257 aaKnown RBP14.07□□□□□ -0.16
VIM-205ENST00000485947 GUCA2AQ02747 115 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 RNASE12Q5GAN4 147 aaKnown RBP14.07□□□□□ -0.16
VIM-205ENST00000485947 FAM201AQ5SY85 155 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 ZNF841Q6ZN19 808 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 TOMM5Q8N4H5 51 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 SULT4A1Q9BR01 284 aa14.07□□□□□ -0.16
VIM-205ENST00000485947 OR2AT4A6NND4 320 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 GPR37O15354 613 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 LANCL1O43813 399 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 ORC5O43913 435 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 CSF1P09603 554 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 DUSP1P28562 367 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 KCNJ3P48549 501 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 SRSF2Q01130 221 aaKnown RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 ASAH1Q13510 395 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 DYRK1AQ13627 763 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms