RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 A0A1W2PRV1 198 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 ODAMA1E959 279 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 UBE2QL1A1L167 161 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TMEM235A6NFC5 223 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 NAP1L6A6NFF2 107 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 ZNF729A6NN14 1252 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TRDCB7Z8K6 153 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 LY6HO94772 140 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 FCGR3AP08637 254 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 CGB3P0DN86 165 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 CGB7P0DN87 165 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 USF1P22415 310 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 FAUP35544 74 aaKnown RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 GLP1RP43220 463 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TAS2R19P59542 299 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 GMFBP60983 142 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 LMO4P61968 165 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 GNB2P62879 340 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 HTD2P86397 168 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 CARTPTQ16568 116 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 SNX29P2Q8IUI4 249 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TMEM229BQ8NBD8 167 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 LY6G5BQ8NDX9 201 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 C19orf18Q8NEA5 215 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TMEM185AQ8NFB2 350 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 OR5AP2Q8NGF4 316 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 OR4A4PQ8NGN8 299 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 SETD6Q8TBK2 473 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 MRPL30Q8TCC3 161 aaKnown RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 COQ2Q96H96 371 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 SSBP3Q9BWW4 388 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TOLLIPQ9H0E2 274 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 PPA2Q9H2U2 334 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 GAL3ST2Q9H3Q3 398 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 ZNF286AQ9HBT8 521 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 TRAPPC2LQ9UL33 140 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 ANKRD17O75179 2603 aaKnown RBP6.85□□□□□ -1.31
SYNE1-225ENST00000481502 HECTD1Q9ULT8 2610 aa6.85□□□□□ -1.31
SYNE1-225ENST00000481502 APCP25054 2843 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 MALRD1Q5VYJ5 2156 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 MEIKINA0A087WXM9 373 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ANKRD20A5PA0PJZ0 165 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 CENPXA8MT69 81 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 B4DSR2 109 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 NPIPB11E5RHQ5 1161 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 M0R1W7 72 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ITGB1BP1O14713 200 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 SPINT2O43291 252 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 SSX5O60225 188 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 UPK1BO75841 260 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ZNF205O95201 554 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 CD74P04233 296 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 NDUFB7P17568 137 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 SNU13P55769 128 aaKnown RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 RPL31P62899 125 aaKnown RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 AESQ08117 197 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 MEF2DQ14814 521 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 HMGN3Q15651 99 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 Q5PR19 223 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 VAX1Q5SQQ9 334 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 TRIQKQ629K1 86 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 STEAP3Q658P3 488 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 OR52W1Q6IF63 320 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 LYPD2Q6UXB3 125 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 TRAPPC6BQ86SZ2 158 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 TMEM17Q86X19 198 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 BATF2Q8N1L9 274 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 BPIFB2Q8N4F0 458 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 TOMM5Q8N4H5 51 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ARRDC1Q8N5I2 433 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 KIR3DL3Q8N743 410 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 FAM216BQ8N7L0 139 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 BEST4Q8NFU0 473 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 OR52I2Q8NH67 350 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 CLDND2Q8NHS1 167 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 PLPPR1Q8TBJ4 325 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ZFAND2BQ8WV99 257 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 NRGNQ92686 78 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 TRIM63Q969Q1 353 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 GALMQ96C23 342 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 SDHCQ99643 169 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 UNKLQ9H9P5 680 aaKnown RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ZMAT3Q9HA38 289 aaKnown RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 CHMP1AQ9HD42 196 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-225ENST00000481502 IFT46Q9NQC8 304 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 CTSZQ9UBR2 303 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 KIF25Q9UIL4 384 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 ANXA10Q9UJ72 324 aa6.84□□□□□ -1.31
SYNE1-225ENST00000481502 DCHS2Q6V1P9 2916 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 IGHV4-30-2A0A087WSY4 118 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 A0A096LNT2 108 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 KBTBD11-OT1A0A1B0GTJ5 212 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 MEIOCA2RUB1 952 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 ZNF736B4DX44 427 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-225ENST00000481502 F2RL2O00254 374 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 FABP7O15540 132 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 ENSAO43768 121 aaKnown RBP6.83□□□□□ -1.32
SYNE1-225ENST00000481502 RGS11O94810 467 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 AKAIN1P0CW23 69 aa6.83□□□□□ -1.32
SYNE1-225ENST00000481502 ZNF728P0DKX0 622 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms